RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HDAC9Q9UKV0 1011 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 CRYL1Q9Y2S2 319 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 TMX2Q9Y320 296 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 USP47Q96K76 1375 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 CDC42BPAQ5VT25 1732 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 ZNF804BA4D1E1 1349 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 KDM5DQ9BY66 1539 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 CHD1O14646 1710 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 MBD3L4A6NDZ8 208 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 MBD3L3A6NE82 208 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 F5H697 171 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 GCOM1H8Y6P7 765 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 IPO5O00410 1097 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 GRPP07492 148 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 HNRNPCP07910 306 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS29-202ENST00000447578 EBLN1P0CF75 366 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 TXNP10599 105 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 IDEP14735 1019 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 IL1R1P14778 569 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 BTF3P20290 206 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 KLRC1P26715 233 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 IL1R2P27930 398 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 SLC11A2P49281 568 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 UCP3P55916 312 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 IRX6P78412 446 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 SLC10A2Q12908 348 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 KLF9Q13886 244 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 HYIQ5T013 277 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 L1TD1Q5T7N2 865 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 ANKRD45Q5TZF3 282 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 DCAF12L1Q5VU92 463 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 C11orf87Q6NUJ2 197 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 USP37Q86T82 979 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 PDSS2Q86YH6 399 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 FAM9BQ8IZU0 186 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 POC1BQ8TC44 478 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 FAM71BQ8TC56 605 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 STYXQ8WUJ0 223 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 DDX17Q92841 729 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 PBKQ96KB5 322 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 SEC62Q99442 399 aaKnown RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 KRTAP1-5Q9BYS1 174 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 TPSD1Q9BZJ3 242 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 NECTIN3Q9NQS3 549 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 RLIMQ9NVW2 624 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 RGL1Q9NZL6 768 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 IFT80Q9P2H3 777 aaPredicted RBP4.73□□□□□ -1.65
VPS29-202ENST00000447578 IGSF9Q9P2J2 1179 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 GJD2Q9UKL4 321 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 PLEKHM1Q9Y4G2 1056 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 ERCC6L2Q5T890 1561 aa4.73□□□□□ -1.65
VPS29-202ENST00000447578 UHRF1BP1Q6BDS2 1440 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS29-202ENST00000447578 ABCC2Q92887 1545 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 SYCP2Q9BX26 1530 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 PREX2Q70Z35 1606 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 A0A087WWL8 130 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 A0A0B4J269 797 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 ZNF785A8K8V0 405 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 E7ENX8 843 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 EYA2O00167 538 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 POLRMTO00411 1230 aaKnown RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 DNAJB5O75953 348 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 TNFRSF6BO95407 300 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 LDHCP07864 332 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 FAM163BP0C2L3 166 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 DRD4P21917 467 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 GABRB3P28472 473 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 MPGP29372 298 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 CCT8P50990 548 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 TAP2Q03519 686 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 MAPK7Q13164 816 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 TUBB3Q13509 450 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 SLC29A2Q14542 456 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 ETFDHQ16134 617 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 ARHGAP15Q53QZ3 475 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 RETSATQ6NUM9 610 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 ZNF66Q6ZN08 573 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 USP49Q70CQ1 688 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 MOGAT3Q86VF5 341 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 CCDC117Q8IWD4 279 aaPredicted RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 SPSB4Q96A44 273 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 NEUROD6Q96NK8 337 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 PRPF18Q99633 342 aaKnown RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 SMOQ99835 787 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 CNPPD1Q9BV87 410 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 SLC26A6Q9BXS9 759 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 AMBRA1Q9C0C7 1298 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 MS4A7Q9GZW8 240 aaPredicted RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 KIF17Q9P2E2 1029 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 MID2Q9UJV3 735 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 SCAF8Q9UPN6 1271 aaKnown RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 LAS1LQ9Y4W2 734 aaKnown RBP4.72□□□□□ -1.65
VPS29-202ENST00000447578 RALGAPBQ86X10 1494 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 SHROOM2Q13796 1616 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 FAM135AQ9P2D6 1515 aa4.72□□□□□ -1.65
VPS29-202ENST00000447578 TTC37Q6PGP7 1564 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 PLEKHH2Q8IVE3 1493 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 ROCK2O75116 1388 aaKnown RBP4.71□□□□□ -1.66
VPS29-202ENST00000447578 TARM1B6A8C7 271 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 154.3 ms