RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 LRRC38Q5VT99 294 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 GDF6Q6KF10 455 aaPredicted RBP12.37□□□□□ -0.43
PTPRN-204ENST00000423636 ARHGEF18Q6ZSZ5 1173 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 NIPA2Q8N8Q9 360 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 B3GALNT2Q8NCR0 500 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 RNF34Q969K3 372 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 ULBP1Q9BZM6 244 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 LRRC4Q9HBW1 653 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 FBXO6Q9NRD1 293 aaPredicted RBP12.37□□□□□ -0.43
PTPRN-204ENST00000423636 PIGVQ9NUD9 493 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 ARMCX1Q9P291 453 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 PRUNE2Q8WUY3 3088 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 B3GAT3O94766 335 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 VAV1P15498 845 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 TKTL1P51854 596 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 CAV1Q03135 178 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 TAP1Q03518 808 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 PLEKHG4Q58EX7 1191 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 DSTYKQ6XUX3 929 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 ANKLE1Q8NAG6 615 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 BBOF1Q8ND07 529 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 SHCBP1Q8NEM2 672 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 TRPV1Q8NER1 839 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 SHCBP1LQ9BZQ2 653 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 CYP3A43Q9HB55 503 aa12.37□□□□□ -0.43
PTPRN-204ENST00000423636 PSMC3IPQ9P2W1 217 aaPredicted RBP12.37□□□□□ -0.43
PTPRN-204ENST00000423636 GNEQ9Y223 722 aaKnown RBP12.37□□□□□ -0.43
PTPRN-204ENST00000423636 DRG1Q9Y295 367 aaKnown RBP12.37□□□□□ -0.43
PTPRN-204ENST00000423636 C17orf102A2RUQ5 167 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 BDNFP23560 247 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ATICP31939 592 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 GBP2P32456 591 aaPredicted RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 PBX3P40426 434 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ARPP19P56211 112 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 YWHAZP63104 245 aaKnown RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 IL9RQ01113 521 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 INCA1Q0VD86 236 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 MAP2K5Q13163 448 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 FAM187BQ17R55 369 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 FAM110CQ1W6H9 321 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 IQSEC1Q6DN90 963 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CYB5D1Q6P9G0 228 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CAND1Q86VP6 1230 aaKnown RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 VSIG1Q86XK7 387 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ATP11CQ8NB49 1132 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ARMC2Q8NEN0 867 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CSPG4P5Q96PW8 444 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 MYLK2Q9H1R3 596 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ATXN3LQ9H3M9 355 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ZNF358Q9NW07 568 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 WDR35Q9P2L0 1181 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 PLXNA1Q9UIW2 1896 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 H0Y3Z8 333 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 SCAMP3O14828 347 aaKnown RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 F2P00734 622 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CSH1P0DML2 217 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CSH2P0DML3 217 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 TAF6P49848 677 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 CRHR2Q13324 411 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 POLNQ7Z5Q5 900 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 TTC7BQ86TV6 843 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 SIX6OS1Q8N1H7 587 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 TRMT13Q9NUP7 481 aaKnown RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 MTMR10Q9NXD2 777 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 DTLQ9NZJ0 730 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 NRCAMQ92823 1304 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 TTC24A2A3L6 582 aaPredicted RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 C5orf60A6NFR6 353 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 A6NNZ2 444 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 ATP9BO43861 1147 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 LPXNO60711 386 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 AP1G2O75843 785 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 SOAT2O75908 522 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 KRT16P08779 473 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 TUBB8Q3ZCM7 444 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 RWDD4Q6NW29 188 aaKnown RBP12.36□□□□□ -0.43
PTPRN-204ENST00000423636 PAQR9Q6ZVX9 377 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 MAP7D3Q8IWC1 876 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 KLHL29Q96CT2 875 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 SENP8Q96LD8 212 aa12.36□□□□□ -0.43
PTPRN-204ENST00000423636 MSI1O43347 362 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 SUN1O94901 812 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ASMTLO95671 621 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 CPP00450 1065 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PSMB4P28070 264 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 COPS2P61201 443 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PPM1JQ5JR12 505 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 OTOAQ7RTW8 1153 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 MTDHQ86UE4 582 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 DCAKDQ8WVC6 231 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 CRTAC1Q9NQ79 661 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 HCSTQ9UBK5 93 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ABT1Q9ULW3 272 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 UBQLN1Q9UMX0 589 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 SHOC2Q9UQ13 582 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PSAT1Q9Y617 370 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ERVK-10P10266 1014 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PTPN1P18031 435 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 MGAT1P26572 445 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ATP5DP30049 168 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms