RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 INTUQ9ULD6 942 aa17.74■□□□□ 0.43
COL7A1-202ENST00000422991 REXO2Q9Y3B8 237 aaKnown RBP17.74■□□□□ 0.43
COL7A1-202ENST00000422991 C2CD4BA6NLJ0 364 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 ARHGAP6O43182 974 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 MSI1O43347 362 aaKnown RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 PTMAP06454 111 aaKnown RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 RFC1P35251 1148 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 VIPR2P41587 438 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 RPL7AP62424 266 aaKnown RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 ZXDBP98169 803 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 TANGO2Q6ICL3 276 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 PARM1Q6UWI2 310 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 CELF5Q8N6W0 485 aaKnown RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 ACRBPQ8NEB7 543 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 RIN3Q8TB24 985 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 FGF14Q92915 247 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 NT5C3BQ969T7 300 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 ELSPBP1Q96BH3 223 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 SERPINB11Q96P15 392 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 NPY6RQ99463 290 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 ZFP14Q9HCL3 533 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 CD320Q9NPF0 282 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 OBP2AQ9NY56 170 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 RRN3Q9NYV6 651 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 SFMBT1Q9UHJ3 866 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 HBS1LQ9Y450 684 aaKnown RBP17.73■□□□□ 0.43
COL7A1-202ENST00000422991 PCDHA13Q9Y5I0 950 aa17.73■□□□□ 0.43
COL7A1-202ENST00000422991 C19orf67A6NJJ6 358 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 LEFTY2O00292 366 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 ECI2O75521 394 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 IPO7O95373 1038 aaKnown RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 TRUB2O95900 331 aaKnown RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 TFE3P19532 575 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 MAGEA1P43355 309 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 PTPN9P43378 593 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 NNTQ13423 1086 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 TRIP4Q15650 581 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 ZNF77Q15935 545 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 SLC25A52Q3SY17 297 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 DCUN1D2Q6PH85 259 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 DDX42Q86XP3 938 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 ST13P5Q8NFI4 369 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 ADAM32Q8TC27 787 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 SH3RF2Q8TEC5 729 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 RXFP2Q8WXD0 754 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 E2F7Q96AV8 911 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 CFAP57Q96MR6 1250 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 KXD1Q9BQD3 176 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 NUP85Q9BW27 656 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 ADAM33Q9BZ11 813 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 FAM204AQ9H8W3 233 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 MRPL47Q9HD33 250 aaKnown RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 LUC7LQ9NQ29 371 aaKnown RBP17.72■□□□□ 0.43
COL7A1-202ENST00000422991 GKN1Q9NS71 199 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 STAP1Q9ULZ2 295 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 NUMBLQ9Y6R0 609 aa17.72■□□□□ 0.43
COL7A1-202ENST00000422991 SLC12A8A0AV02 714 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 TMEM191CA6NGB0 347 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 HEPACAM2A8MVW5 462 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 DPYSL4O14531 572 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 IRAK2O43187 625 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 NRDCO43847 1150 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 IGLV3-27P01718 113 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 IRF1P10914 325 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 PDGFRAP16234 1089 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 GPD1P21695 349 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 SDC4P31431 198 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 SULT1E1P49888 294 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 COG7P83436 770 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 OGDHQ02218 1023 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 EIF4EBP2Q13542 120 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-202ENST00000422991 CCDC14Q49A88 953 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 VITQ6UXI7 678 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 BNIPLQ7Z465 357 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 PGAP3Q96FM1 320 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-202ENST00000422991 LRRC3BQ96PB8 259 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 TBCBQ99426 244 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 DESI2Q9BSY9 194 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 TRIM7Q9C029 511 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 KCNF1Q9H3M0 494 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 DDIT4Q9NX09 232 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 CALCOCO1Q9P1Z2 691 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 CFAP97Q9P2B7 532 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 LIMD1Q9UGP4 676 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 TLR6Q9Y2C9 796 aa17.71■□□□□ 0.43
COL7A1-202ENST00000422991 M0QYT0 321 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 STC2O76061 302 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 HMBSP08397 361 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 KPNA1P52294 538 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-202ENST00000422991 ZNF143P52747 638 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-202ENST00000422991 KRT83P78385 493 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 RING1Q06587 406 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 ZNF252P-AS1Q0IIN9 211 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 ZNF564Q8TBZ8 553 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-202ENST00000422991 FNIP1Q8TF40 1166 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 RFFLQ8WZ73 363 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 WBP2Q969T9 261 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 NXPE3Q969Y0 559 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 PLD4Q96BZ4 506 aa17.7■□□□□ 0.42
COL7A1-202ENST00000422991 SLC39A13Q96H72 371 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms