RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	KLF16	Q9BXK1	252 aa	Predicted RBP	13.73	□□□□□ -0.21
SF1-206	ENST00000413725	FAM204A	Q9H8W3	233 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	KCNK12	Q9HB15	430 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	TMEM51	Q9NW97	253 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	THG1L	Q9NWX6	298 aa	Known RBP	13.73	□□□□□ -0.21
SF1-206	ENST00000413725	CFAP97	Q9P2B7	532 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	MYO1A	Q9UBC5	1043 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	SFMBT1	Q9UHJ3	866 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	TMEM59L	Q9UK28	342 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	LSM7	Q9UK45	103 aa	Known RBP	13.73	□□□□□ -0.21
SF1-206	ENST00000413725	SH3BP1	Q9Y3L3	701 aa		13.73	□□□□□ -0.21
SF1-206	ENST00000413725	HBS1L	Q9Y450	684 aa	Known RBP	13.73	□□□□□ -0.21
SF1-206	ENST00000413725	F5	P12259	2224 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	TCRBV5S1A1T	A0A578	114 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	EIF3CL	B5ME19	914 aa	Known RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	LCA5L	O95447	670 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	TRUB2	O95900	331 aa	Known RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	PTMA	P06454	111 aa	Known RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	HMBS	P08397	361 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	IRF1	P10914	325 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	SDC4	P31431	198 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	FLT3	P36888	993 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	GALC	P54803	685 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	GPC5	P78333	572 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	NNT	Q13423	1086 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	MTF1	Q14872	753 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	TAC4	Q86UU9	113 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	GJD3	Q8N144	294 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	KIAA1958	Q8N8K9	716 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	RSAD2	Q8WXG1	361 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	PLD4	Q96BZ4	506 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	RSPRY1	Q96DX4	576 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	MCEE	Q96PE7	176 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	EIF3C	Q99613	913 aa	Known RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	DDX23	Q9BUQ8	820 aa	Known RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	DCLK3	Q9C098	648 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	THAP2	Q9H0W7	228 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	GKN1	Q9NS71	199 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	DDIT4	Q9NX09	232 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	TLR6	Q9Y2C9	796 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.72	□□□□□ -0.21
SF1-206	ENST00000413725	TTC28	Q96AY4	2481 aa		13.72	□□□□□ -0.21
SF1-206	ENST00000413725	E2F8	A0AVK6	867 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	C2CD4B	A6NLJ0	364 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725		M0QYT0	321 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	SLC9A3R1	O14745	358 aa	Predicted RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	IRAK2	O43187	625 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	MSI1	O43347	362 aa	Known RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	STC2	O76061	302 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	NDUFA10	O95299	355 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	GJB6	O95452	261 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	F9	P00740	461 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	ASGR2	P07307	311 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TMEM253	P0C7T8	217 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	PDGFRA	P16234	1089 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	GPD1	P21695	349 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	RFC1	P35251	1148 aa	Predicted RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	SULT1E1	P49888	294 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TBX4	P57082	545 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	RING1	Q06587	406 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	FCHO2	Q0JRZ9	810 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	MAMLD1	Q13495	774 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TDG	Q13569	410 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	GRM2	Q14416	872 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TRIP4	Q15650	581 aa	Predicted RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	SLC25A52	Q3SY17	297 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	ARHGAP29	Q52LW3	1261 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	PPP1R15B	Q5SWA1	713 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	NUGGC	Q68CJ6	796 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	RNF135	Q8IUD6	432 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TMEM139	Q8IV31	216 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	EMC1	Q8N766	993 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	JOSD2	Q8TAC2	188 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	ADAM32	Q8TC27	787 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	RXFP2	Q8WXD0	754 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	UHRF1	Q96T88	793 aa	Predicted RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	NPY6R	Q99463	290 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	TRMT61B	Q9BVS5	477 aa	Known RBP	13.71	□□□□□ -0.21
SF1-206	ENST00000413725	PLA2G2F	Q9BZM2	168 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	INTU	Q9ULD6	942 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	ZNF510	Q9Y2H8	683 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	PAXBP1	Q9Y5B6	917 aa		13.71	□□□□□ -0.21
SF1-206	ENST00000413725	COL4A2	P08572	1712 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	ZNF263	O14978	683 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	CHAD	O15335	359 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	IGLV3-25	P01717	112 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	APOE	P02649	317 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	CYP1A2	P05177	515 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	SLC2A3	P11169	496 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	GDI1	P31150	447 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	MAGEA1	P43355	309 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	PTPN9	P43378	593 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	IFNAR2	P48551	515 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	HARS2	P49590	506 aa	Known RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	RPL7A	P62424	266 aa	Known RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	ZXDB	P98169	803 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	NME3	Q13232	169 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms