RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CYTH2Q99418 400 aa14.09□□□□□ -0.15
LIMS1-205ENST00000410093 POPDC2Q9HBU9 364 aa14.09□□□□□ -0.15
LIMS1-205ENST00000410093 PNPLA8Q9NP80 782 aa14.09□□□□□ -0.15
LIMS1-205ENST00000410093 DNAJC17Q9NVM6 304 aaKnown RBP14.09□□□□□ -0.15
LIMS1-205ENST00000410093 SAE1Q9UBE0 346 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-205ENST00000410093 KBTBD13C9JR72 458 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 PIK3R2O00459 728 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 KCNN4O15554 427 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 F9P00740 461 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 ODC1P11926 461 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 STX2P32856 288 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 PTK7Q13308 1070 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 FAM26DQ5JW98 314 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 GDF6Q6KF10 455 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 ADGRD1Q6QNK2 874 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 DSTYKQ6XUX3 929 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 RGS9BPQ6ZS82 235 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 C3orf62Q6ZUJ4 267 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 CCDC121Q6ZUS5 278 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 BEND5Q7L4P6 421 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 PRUNE1Q86TP1 453 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 KLHDC9Q8NEP7 349 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 NTAN1Q96AB6 310 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 PGAP3Q96FM1 320 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 QKIQ96PU8 341 aaKnown RBP eCLIP14.08□□□□□ -0.164e-8■■■■■ 31.8
LIMS1-205ENST00000410093 NPY6RQ99463 290 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 PRMT1Q99873 361 aaKnown RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 MED10Q9BTT4 135 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 DHRS4Q9BTZ2 278 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 B3GNT5Q9BYG0 378 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 BRD8Q9H0E9 1235 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 DHX35Q9H5Z1 703 aaKnown RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 KCNK9Q9NPC2 374 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 DDX43Q9NXZ2 648 aaKnown RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 RABGEF1Q9UJ41 708 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 FZD10Q9ULW2 581 aa14.08□□□□□ -0.16
LIMS1-205ENST00000410093 TDRD15B5MCY1 1934 aaKnown RBP14.08□□□□□ -0.16
LIMS1-205ENST00000410093 NCAM2O15394 837 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 ADAMTS4O75173 837 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 FAM155BO75949 473 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 ZWINTO95229 277 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 CHRNA1P02708 482 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 CYP11A1P05108 521 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 GHRP10912 638 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 FDFT1P37268 417 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 HCAR3P49019 387 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 TSC2P49815 1807 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 ADCY1Q08828 1119 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 ADIGQ0VDE8 80 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 GRIK3Q13003 919 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 RAB41Q5JT25 222 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 UBAP2Q5T6F2 1119 aaKnown RBP14.07□□□□□ -0.16
LIMS1-205ENST00000410093 LGSNQ5TDP6 509 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 WSCD1Q658N2 575 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 C1orf228Q6PIY5 440 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 CXCL17Q6UXB2 119 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 CLEC20AQ6ZU45 233 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 ZC3H18Q86VM9 953 aaKnown RBP14.07□□□□□ -0.16
LIMS1-205ENST00000410093 OSTM1Q86WC4 334 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 VPS52Q8N1B4 723 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 SMARCD1Q96GM5 515 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 PWWP2AQ96N64 755 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 CSPG4P5Q96PW8 444 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 SYT15Q9BQS2 421 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 RASSF4Q9H2L5 321 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 KDM4CQ9H3R0 1056 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 XAB2Q9HCS7 855 aaKnown RBP14.07□□□□□ -0.16
LIMS1-205ENST00000410093 XPNPEP3Q9NQH7 507 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.07□□□□□ -0.16
LIMS1-205ENST00000410093 TEX264Q9Y6I9 313 aa14.07□□□□□ -0.16
LIMS1-205ENST00000410093 A0A0U1RQF3 1178 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 IQANK1A0A1B0GTG1 560 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 MYADML2A6NDP7 307 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 ARL5CA6NH57 179 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 DNM1LO00429 736 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 INPPL1O15357 1258 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 CPP00450 1065 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 VIMP08670 466 aaKnown RBP14.06□□□□□ -0.16
LIMS1-205ENST00000410093 MLNP12872 115 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 KRT15P19012 456 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 MSH2P43246 934 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 SULT1E1P49888 294 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 SCAPQ12770 1279 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 SPARCL1Q14515 664 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 PDK1Q15118 436 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 TMED2Q15363 201 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 ARL13BQ3SXY8 428 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 PPP6R3Q5H9R7 873 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-205ENST00000410093 INTS6LQ5JSJ4 861 aaKnown RBP14.06□□□□□ -0.16
LIMS1-205ENST00000410093 CYS1Q717R9 158 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 CCNJLQ8IV13 435 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 SRRM1Q8IYB3 904 aaKnown RBP14.06□□□□□ -0.16
LIMS1-205ENST00000410093 C7orf61Q8IZ16 206 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 DEFB106AQ8N104 65 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 GBP7Q8N8V2 638 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-205ENST00000410093 FBXO36Q8NEA4 188 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 GSTCDQ8NEC7 633 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 WNT8BQ93098 351 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 FAM149B1Q96BN6 582 aa14.06□□□□□ -0.16
LIMS1-205ENST00000410093 ACBD6Q9BR61 282 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms