RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NFIL3Q16649 462 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 LY6KQ17RY6 165 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 SUPT20HL1Q3ZLR7 823 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 MTHFD1LQ6UB35 978 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 FAM83AQ86UY5 434 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CPT1BQ92523 772 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CPB2Q96IY4 423 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 SPATA33Q96N06 139 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CGRRF1Q99675 332 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CAAP1Q9H8G2 361 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 A8MXQ7 604 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UGT1A9O60656 530 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 PEX11AO75192 247 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UNGP13051 313 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 ATP6V1C1P21283 382 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 AMPD1P23109 780 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 KDELR1P24390 212 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CASP2P42575 452 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 BACE1P56817 501 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 DSG1Q02413 1049 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 SIX1Q15475 284 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 ACSBG2Q5FVE4 666 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 ATF7IP2Q5U623 682 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 MON1BQ7L1V2 547 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 DEFB107AQ8IZN7 70 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 KCTD17Q8N5Z5 321 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 GSTCDQ8NEC7 633 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CAPSLQ8WWF8 208 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 TFAP2BQ92481 460 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 PTPRN2Q92932 1015 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 USP13Q92995 863 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CD101Q93033 1021 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 LENG1Q96BZ8 264 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 DCPSQ96C86 337 aaKnown RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CCDC138Q96M89 665 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 TIPINQ9BVW5 301 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 LRMDAQ9H2I8 198 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 RSAD1Q9HA92 442 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 EBF2Q9HAK2 575 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UGT1A7Q9HAW7 530 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UGT1A10Q9HAW8 530 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UGT1A8Q9HAW9 530 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 HOXC10Q9NYD6 342 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 UBIAD1Q9Y5Z9 338 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 PRR5-ARHGAP8B1AHC4 643 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 KRT8P05787 483 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 FKBP1AP62942 108 aaKnown RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 ARHGAP8P85298 464 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 ITGA9Q13797 1035 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 C12orf29Q8N999 325 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 GIPC3Q8TF64 312 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 FAM172AQ8WUF8 416 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 LZICQ8WZA0 190 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-206ENST00000405805 GTSE1Q9NYZ3 720 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CCDC88AQ3V6T2 1871 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 TMEM191CA6NGB0 347 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 VWA5AO00534 786 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 DCXO43602 365 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 NPTXRO95502 500 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 C6orf222P0C671 652 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 NOVP48745 357 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 WNT7BP56706 349 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 PTPN20Q4JDL3 420 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 WASHC2DQ5SRD0 308 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 THOC7Q6I9Y2 204 aaKnown RBP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 DPY19L2P1Q6NXN4 242 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SLC39A4Q6P5W5 647 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 RNF19BQ6ZMZ0 732 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 C4orf50Q6ZRC1 276 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 ANKS1BQ7Z6G8 1248 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 STKLD1Q8NE28 680 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 MRPL1Q9BYD6 325 aaKnown RBP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 RNPEPQ9H4A4 650 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 ETNK2Q9NVF9 386 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 TAS2R1Q9NYW7 299 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 TMCO1Q9UM00 188 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 B4GALT5O43286 388 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 DAB1O75553 588 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 TMEM63AO94886 807 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SUPT20HL2P0C7V6 817 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 GPD1P21695 349 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 MUTP22033 750 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 GARSP41250 739 aaKnown RBP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 RAP1GDS1P52306 607 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SERAC1Q96JX3 654 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 MFSD14AQ96MC6 490 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SIK2Q9H0K1 926 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SLC17A6Q9P2U8 582 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 KCNK1O00180 336 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 MMP8P22894 467 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 NCKAP1LP55160 1127 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 OGDHQ02218 1023 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 FASTKD1Q53R41 847 aaKnown RBP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 PLEKHA7Q6IQ23 1121 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 RIPOR1Q6ZS17 1223 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.31□□□□□ -0.44
HMGB1-206ENST00000405805 HPDLQ96IR7 371 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 GRIP2Q9C0E4 1043 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms