RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 GTF3C4Q9UKN8 822 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 A0A087X0T9 212 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 FAM228BP0C875 321 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 CSHL1Q14406 222 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 IQSEC1Q6DN90 963 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 CCDC60Q8IWA6 550 aaPredicted RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 SYTL1Q8IYJ3 562 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 KCNB2Q92953 911 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 A1CFQ9NQ94 594 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 GID8Q9NWU2 228 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 AKAP3O75969 853 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 RIN3Q8TB24 985 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 TMC2Q8TDI7 906 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 MTFMTQ96DP5 389 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 RAB23Q9ULC3 237 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 DUSP10Q9Y6W6 482 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SDR42E2A6NKP2 422 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 RSPH1Q8WYR4 309 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 KCNF1Q9H3M0 494 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 RTN3O95197 1032 aaPredicted RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 FAM107AO95990 144 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 SLC13A5Q86YT5 568 aaPredicted RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.67□□□□□ -0.54
TTC28-201ENST00000397906 UBE2Q2Q8WVN8 375 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 RIOX1Q9H6W3 641 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 NT5C1B-RDH14C9J2C7 533 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 NUDT2P50583 147 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 ZNF558Q96NG5 402 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 PPIEQ9UNP9 301 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 CDY1Q9Y6F8 540 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 KRT16P08779 473 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 THOP1P52888 689 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 PLOD1Q02809 727 aaPredicted RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 RGMBQ6NW40 437 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 IYDQ6PHW0 289 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 ZNF410Q86VK4 478 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 GSTM1P09488 218 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 TCF3P15923 654 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 SERPINB8P50452 374 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 MOXD1Q6UVY6 613 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 FIBCD1Q8N539 461 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 PIK3R5Q8WYR1 880 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 EXOSC4Q9NPD3 245 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 ZC4H2Q9NQZ6 224 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 BCL2L1Q07817 233 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 KHDRBS2Q5VWX1 349 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 PLPP4Q5VZY2 271 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 GPR152Q8TDT2 470 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 OSGEPQ9NPF4 335 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 ARL2BPQ9Y2Y0 163 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 SLITRK3O94933 977 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 MDH1P40925 334 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 C4orf22Q6V702 233 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 RPAINQ86UA6 219 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 FAM124AQ86V42 546 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 TPST1O60507 370 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 WDR47O94967 919 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 TOB1P50616 345 aaPredicted RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 MRPS6P82932 125 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 MYOCQ99972 504 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 GPAMQ9HCL2 828 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 GOLGA8TH3BQL2 631 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 STIP1P31948 543 aaKnown RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 ZNF697Q5TEC3 545 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 SUSD6Q92537 303 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 RHBGQ9H310 441 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 KRCC1Q9NPI7 259 aaPredicted RBP11.67□□□□□ -0.54
TTC28-201ENST00000397906 TREML2Q5T2D2 321 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 ANKRD49Q8WVL7 239 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 ELOVL4Q9GZR5 314 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 SLC27A5Q9Y2P5 690 aa11.67□□□□□ -0.54
TTC28-201ENST00000397906 F8VZ95 297 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 IGSF6O95976 241 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CHADLQ6NUI6 762 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 RETSATQ6NUM9 610 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 ARHGEF19Q8IW93 802 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 SEMA4DQ92854 862 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CAAP1Q9H8G2 361 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 SV2AQ7L0J3 742 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CNPY3Q9BT09 278 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CCZ1BP86790 482 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CCZ1P86791 482 aaPredicted RBP11.66□□□□□ -0.54
TTC28-201ENST00000397906 CCDC81Q6ZN84 652 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 SERPINB11Q96P15 392 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 OSBPL10Q9BXB5 764 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 TRPC4Q9UBN4 977 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 TFE3P19532 575 aaPredicted RBP11.66□□□□□ -0.54
TTC28-201ENST00000397906 DENND1CQ8IV53 801 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 TKTL2Q9H0I9 626 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 SERPINF2P08697 491 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 TRIM60Q495X7 471 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 CELF3Q5SZQ8 465 aaKnown RBP11.66□□□□□ -0.54
TTC28-201ENST00000397906 EFL1Q7Z2Z2 1120 aaKnown RBP11.66□□□□□ -0.54
TTC28-201ENST00000397906 CMTM5Q96DZ9 223 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 TISP43B9A030 160 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 ZW10O43264 779 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 MDM1Q8TC05 714 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 BCL9O00512 1426 aa11.66□□□□□ -0.54
TTC28-201ENST00000397906 UBA1P22314 1058 aaKnown RBP11.66□□□□□ -0.54
TTC28-201ENST00000397906 RENBPP51606 427 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms