RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DAAM1Q9Y4D1 1078 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 A0A1B0GUL6 1792 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 A0A1W2PQH9 124 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RTP2Q5QGT7 225 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 CDCA2Q69YH5 1023 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RFWD3Q6PCD5 774 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ZNF572Q7Z3I7 529 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RNF10Q8N5U6 811 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TMA16Q96EY4 203 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TTC25Q96NG3 672 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TGS1Q96RS0 853 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SELENOSQ9BQE4 189 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ST6GALNAC4Q9H4F1 302 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 DMAC2Q9NW81 257 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ZMYM2Q9UBW7 1377 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 GTPBP10A4D1E9 387 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SETSIPP0DME0 302 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 CTNNA1P35221 906 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 PBX2P40425 430 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SLCO1A2P46721 670 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 EIF3EP60228 445 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 NTHL1P78549 312 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 NAA25Q14CX7 972 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 CNGA2Q16280 664 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 CLEC16AQ2KHT3 1053 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 PREPLQ4J6C6 727 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 HECTD3Q5T447 861 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 AADACL2Q6P093 401 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ANKRD52Q8NB46 1076 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 EXOC2Q96KP1 924 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TSNARE1Q96NA8 513 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 MPP6Q9NZW5 540 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 GGA2Q9UJY4 613 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 HAS3O00219 553 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 APRTP07741 180 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 GLI1P08151 1106 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 PSEN1P49768 467 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ATXN1P54253 815 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RAD23BP54727 409 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 E2F5Q15329 346 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 PTPN20Q4JDL3 420 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 GKAP1Q5VSY0 366 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SLFN11Q7Z7L1 901 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 IQCKQ8N0W5 287 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TTC9BQ8N6N2 239 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 JOSD2Q8TAC2 188 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ATXN7L3BQ96GX2 97 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 UROC1Q96N76 676 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FIZ1Q96SL8 496 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TLR9Q9NR96 1032 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 DPP7Q9UHL4 492 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 USP18Q9UMW8 372 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 AP4E1Q9UPM8 1137 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SNX10Q9Y5X0 201 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FER1L6Q2WGJ9 1857 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ECEL1O95672 775 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FAM153BP0C7A2 387 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RBP3P10745 1247 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 AMPD1P23109 780 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TUBP50607 506 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ROR1Q01973 937 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FAM153CQ494X1 144 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 OSTM1Q86WC4 334 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 OR6P1Q8NGX9 317 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 IGSF21Q96ID5 467 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RBM41Q96IZ5 413 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 PCDHB18PQ96TA0 734 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TM6SF2Q9BZW4 377 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 GANQ9H2C0 597 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 SARS2Q9NP81 518 aaKnown RBP10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ZDHHC4Q9NPG8 344 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 RGS18Q9NS28 235 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 TBK1Q9UHD2 729 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FAM153AQ9UHL3 310 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 ATP8A1Q9Y2Q0 1164 aa10.68□□□□□ -0.7
COL6A3-205ENST00000392004 FMO1Q01740 532 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GPS1Q13098 491 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 INTS6LQ5JSJ4 861 aaKnown RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FAM109BQ6ICB4 259 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 TAS1R1Q7RTX1 841 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 TMEM173Q86WV6 379 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 SNX19Q92543 992 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CFAP36Q96G28 342 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 RSRC1Q96IZ7 334 aaKnown RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CCDC77Q9BR77 488 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 OSBPL8Q9BZF1 889 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 TTYH3Q9C0H2 523 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 BRD9Q9H8M2 597 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 PAK6Q9NQU5 681 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 DYRK4Q9NR20 520 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 NDRG2Q9UN36 371 aaKnown RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 LCHNA4D1U4 455 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 APOL1O14791 398 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 ZNF263O14978 683 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CILPO75339 1184 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GJB5O95377 273 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 KRT15P19012 456 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 OR1E1P30953 314 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms