RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ZCCHC2Q9C0B9 1178 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL25Q9H0H3 589 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 VANGL2Q9ULK5 521 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 STON1Q9Y6Q2 735 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 TULP4Q9NRJ4 1543 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KPNA6O60684 536 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CELF2O95319 508 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 SGPL1O95470 568 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 IRAK1P51617 712 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ATP12AP54707 1039 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF618Q5T7W0 954 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 SAMD3Q8N6K7 520 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 DAGLBQ8NCG7 672 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CASKIN2Q8WXE0 1202 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PDLIM2Q96JY6 352 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 TUBE1Q9UJT0 475 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 FAM205CA6NFA0 338 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KRT6AP02538 564 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KRT6BP04259 564 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KLRC1P26715 233 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KRT6CP48668 564 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 EFEMP1Q12805 493 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 HLA-DQA1Q5Y7H0 255 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL24Q6TFL4 600 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 FLCNQ8NFG4 579 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CGRRF1Q99675 332 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 HAO1Q9UJM8 370 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 AP4E1Q9UPM8 1137 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 DNAJC16Q9Y2G8 782 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PCDHB12Q9Y5F1 795 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 RAD51BO15315 384 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 FKBP6O75344 327 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 VPS4BO75351 444 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RASA1P20936 1047 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 YY1P25490 414 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ALDH9A1P49189 494 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SKP1P63208 163 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 DGKKQ5KSL6 1271 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 FAM228AQ86W67 206 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CBWD2Q8IUF1 395 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 KCNF1Q9H3M0 494 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 NT5MQ9NPB1 228 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 VTI1BQ9UEU0 232 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CDC42BPAQ5VT25 1732 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CCDC189A1A4V9 331 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 PCDH8O95206 1070 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 TKTP29401 623 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 PRKAA1Q13131 559 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CRYMQ14894 314 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 GLRA4Q5JXX5 417 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 GRTP1Q5TC63 336 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 LRRC34Q8IZ02 419 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 MDM1Q8TC05 714 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RAD21L1Q9H4I0 556 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ANKRD6Q9Y2G4 727 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 MED14O60244 1454 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 LINC00854A0A1B0GVQ3 168 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 IL5RAQ01344 420 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RABL6Q3YEC7 729 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RSBN1Q5VWQ0 802 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SYTL1Q8IYJ3 562 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ARRDC4Q8NCT1 418 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 EPS8L3Q8TE67 593 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 STARD8Q92502 1023 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 KAT2BQ92831 832 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 MAGED4Q96JG8 741 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 APOL4Q9BPW4 351 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ATP6V1HQ9UI12 483 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ACOT9Q9Y305 439 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ENO2P09104 434 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RAD9BQ6WBX8 426 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 HIC2Q96JB3 615 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 BDH2Q9BUT1 245 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM120AQ9BXJ8 343 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CXorf56Q9H5V9 222 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ACTR8Q9H981 624 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 MYL12AP19105 171 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 HPCAL1P37235 193 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SERPINH1P50454 418 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SGCGQ13326 291 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 NR6A1Q15406 480 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CDC73Q6P1J9 531 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 WDR49Q8IV35 697 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 CAMKK1Q8N5S9 505 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 TAAR1Q96RJ0 339 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ACOX2Q99424 681 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 A0A087WZ62 844 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC12A8A0AV02 714 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 MEI4A8MW99 385 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC2A4P14672 509 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 PAICSP22234 425 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 AQP5P55064 265 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 HUNKP57058 714 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 RASA2Q15283 850 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 PAN2Q504Q3 1202 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF280DQ6N043 979 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 PCSK9Q8NBP7 692 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SKA1Q96BD8 255 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 SPATA2Q9UM82 520 aa13.13□□□□□ -0.31
CCDC88C-204ENST00000389857 ABCC3O15438 1527 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms