RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CHST7Q9NS84 486 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 TMEM30AQ9NV96 361 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 WHRNQ9P202 907 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ZBBXA8MT70 800 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 TBC1D4O60343 1298 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 KRT10P13645 584 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 ARPP19P56211 112 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 DEFB103AP81534 67 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 DPYSL2Q16555 572 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 DNAJC21Q5F1R6 531 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 EFHC2Q5JST6 749 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 BSPRYQ5W0U4 402 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 BTBD8Q5XKL5 378 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 ZDHHC24Q6UX98 284 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 ZNF365Q70YC5 407 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 ZDHHC14Q8IZN3 488 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 SLC39A11Q8N1S5 342 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 SLC7A14Q8TBB6 771 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 ZBTB9Q96C00 473 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 HERC2P3Q9BVR0 1158 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 RC3H2Q9HBD1 1191 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 GRHL1Q9NZI5 618 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 HCSTQ9UBK5 93 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 AP4E1Q9UPM8 1137 aa18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 DRG1Q9Y295 367 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-203ENST00000389856 APOC4-APOC2K7ER74 178 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 TNFRSF10BO14763 440 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 CST8O60676 142 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 EFEMP2O95967 443 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 APOC2P02655 101 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 ACRP10323 421 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 PBX3P40426 434 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 ARL4AP40617 200 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 GLUD2P49448 558 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 PMS2P54278 862 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 YWHAGP61981 247 aaKnown RBP eCLIP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 BYSLQ13895 437 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 DPYSL3Q14195 570 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 LLGL1Q15334 1064 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 SLC8B1Q6J4K2 584 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 FAM117BQ6P1L5 589 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 TTC27Q6P3X3 843 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 BNIPLQ7Z465 357 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 GPR65Q8IYL9 337 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 COLGALT1Q8NBJ5 622 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 BBOF1Q8ND07 529 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 NDRG1Q92597 394 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 ART4Q93070 314 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 NKD2Q969F2 451 aaPredicted RBP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 NTAN1Q96AB6 310 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 SPATA17Q96L03 361 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 MTIF3Q9H2K0 278 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 CNOT10Q9H9A5 744 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 HSFX1Q9UBD0 423 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 NAALADL1Q9UQQ1 740 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 SCML2Q9UQR0 700 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 SSX2IPQ9Y2D8 614 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 SNX24Q9Y343 169 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 PCDHB12Q9Y5F1 795 aa18.9■□□□□ 0.62
CCDC88C-203ENST00000389856 MTMR11A4FU01 709 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 URODP06132 367 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 TGM2P21980 687 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 MDH1P40925 334 aaKnown RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 TUFMP49411 452 aaKnown RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 PSEN1P49768 467 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 ARSEP51690 589 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 PLTPP55058 493 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 IFFO1Q0D2I5 559 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 CALCOCO2Q13137 446 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 SNX1Q13596 522 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 KCTD16Q68DU8 428 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 CYP4V2Q6ZWL3 525 aaPredicted RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 GSTA5Q7RTV2 222 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 MON1AQ86VX9 555 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 TMEM173Q86WV6 379 aaPredicted RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 RNF168Q8IYW5 571 aaPredicted RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 CCDC89Q8N998 374 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 FBXO22Q8NEZ5 403 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 RNF139Q8WU17 664 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 RNF157Q96PX1 679 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 TRIM31Q9BZY9 425 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 STMN4Q9H169 189 aaPredicted RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 DHX35Q9H5Z1 703 aaKnown RBP18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 PCDH18Q9HCL0 1135 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 CDY1Q9Y6F8 540 aa18.89■□□□□ 0.62
CCDC88C-203ENST00000389856 H3BRJ5 948 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 APOL1O14791 398 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 MCF2LO15068 1137 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 LIASO43766 372 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 ZNF189O75820 626 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 HAPLN1P10915 354 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 RARGP13631 454 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 EN2P19622 333 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 ITIH2P19823 946 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 RPL21P46778 160 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 KRT17Q04695 432 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 NME3Q13232 169 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 PTK6Q13882 451 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 MGAT5BQ3V5L5 792 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 TPGS2Q68CL5 300 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms