RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PRKCBP05771 671 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 H2AFXP16104 143 aaPredicted RBP8.96□□□□□ -0.97
LIG3-202ENST00000378526 PITRM1Q5JRX3 1037 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 RPTNQ6XPR3 784 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 BRSK2Q8IWQ3 736 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 OR52K2Q8NGK3 314 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 SLC7A5P2Q9GIP4 190 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 ANTXR1Q9H6X2 564 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 KANTRA0A1W2PQU2 76 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 TTLL13PA6NNM8 815 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 INPP4BO15327 924 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 AKT1P31749 480 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 TRIM23P36406 574 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 CEBPGP53567 150 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 MRPS22P82650 360 aaKnown RBP8.96□□□□□ -0.97
LIG3-202ENST00000378526 TDGQ13569 410 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 OTUD3Q5T2D3 398 aaPredicted RBP8.96□□□□□ -0.97
LIG3-202ENST00000378526 FAM131AQ6UXB0 335 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 VN1R5Q7Z5H4 357 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 IQCF2Q8IXL9 164 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 NCKIPSDQ9NZQ3 722 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 SEPT9Q9UHD8 586 aaPredicted RBP8.96□□□□□ -0.97
LIG3-202ENST00000378526 PRDM4Q9UKN5 801 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 MMP1P03956 469 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 NR3C2P08235 984 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ALDH1A3P47895 512 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 GALK1P51570 392 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ALDH5A1P51649 535 aaPredicted RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 TNK2Q07912 1038 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TWF2Q6IBS0 349 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 MPP5Q8N3R9 675 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 C7orf31Q8N865 590 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 CAVIN3Q969G5 261 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 NOL11Q9H8H0 719 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 SHOC2Q9UQ13 582 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 SIK3Q9Y2K2 1263 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 PRPF3O43395 683 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 DGCR6Q14129 220 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ZNF234Q14588 700 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 VEPH1Q14D04 833 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ACAP1Q15027 740 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 BBS4Q96RK4 519 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TRIM2Q9C040 744 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 DNAAF2Q9NVR5 837 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 OGDHLQ9ULD0 1010 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 CFTRP13569 1480 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 SSU72P8A0A1W2PR75 194 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TMEM114B3SHH9 223 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 CLDN25C9JDP6 229 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 H3BN98 237 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 IPO13O94829 963 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 SLC18A3Q16572 532 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ASPRV1Q53RT3 343 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 PCID2Q5JVF3 399 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 INTS11Q5TA45 600 aaKnown RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 EEF2KMTQ96G04 330 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 FUT8Q9BYC5 575 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TBC1D30Q9Y2I9 924 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 DHRS7Q9Y394 339 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 FAM47E-STBD1D6RA91 191 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 GSTT2BP0CG30 244 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 CCNHP51946 323 aaPredicted RBP8.96□□□□□ -0.98
LIG3-202ENST00000378526 RAD51Q06609 339 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TCTEX1D2Q8WW35 142 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 ASB15Q8WXK1 588 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 REEP1Q9H902 201 aa8.96□□□□□ -0.98
LIG3-202ENST00000378526 TESPA1A2RU30 521 aaPredicted RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 FAM172BPA6NC97 362 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 AKR1B1P15121 316 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PTPN5P54829 565 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CDC42P60953 191 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 IL18Q14116 193 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 SPDYCQ5MJ68 293 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GALNT18Q6P9A2 607 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 TEX19Q8NA77 164 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 C1orf54Q8WWF1 131 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 AIFM3Q96NN9 605 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 FARSBQ9NSD9 589 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 POLR3BQ9NW08 1133 aaPredicted RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 ADPRHL2Q9NX46 363 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 MYH2Q9UKX2 1941 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CITO14578 2027 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 F8W031 263 aaPredicted RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 PDIA3P30101 505 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 PPARAQ07869 468 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PKP1Q13835 747 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 DENND5BQ6ZUT9 1274 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 TMEM132CQ8N3T6 1108 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 SLC38A2Q96QD8 506 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 KDM5DQ9BY66 1539 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 RASSF1Q9NS23 344 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 AFF4Q9UHB7 1163 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 RALAP11233 206 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 DHX40Q8IX18 779 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 NAT14Q8WUY8 206 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CRELD1Q96HD1 420 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 TBC1D14Q9P2M4 693 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 MORF4L1Q9UBU8 362 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PCSK1NQ9UHG2 260 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 FADS3Q9Y5Q0 445 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms