RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LRRC46Q96FV0 321 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 TRMT61AQ96FX7 289 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 VPS50Q96JG6 964 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ADGRE3Q9BY15 652 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SLC25A32Q9H2D1 315 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 AGO4Q9HCK5 861 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 PAXBP1Q9Y5B6 917 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SNX13Q9Y5W8 968 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 A0A1W2PPC1 479 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 INPPL1O15357 1258 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 INSIG1O15503 277 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 TMIGD3P0DMS9 266 aaPredicted RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ARP10275 920 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CD19P15391 556 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ST6GAL1P15907 406 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SCP2P22307 547 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 TACR3P29371 465 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CCDC15Q0P6D6 951 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 GAB1Q13480 694 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 MTX1Q13505 466 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SEMA5AQ13591 1074 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ST3GAL2Q16842 350 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 PFKFB3Q16875 520 aaPredicted RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF793Q6ZN11 406 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 RNF44Q7L0R7 432 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 DGKHQ86XP1 1220 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 HIC2Q96JB3 615 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 FCRL5Q96RD9 977 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 NUAK2Q9H093 628 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 FAM83DQ9H4H8 585 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 TRIM36Q9NQ86 728 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ARL8BQ9NVJ2 186 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 GAR1Q9NY12 217 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 HEMK1Q9Y5R4 338 aaPredicted RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CD8B2A6NJW9 211 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 C2CD4BA6NLJ0 364 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 KPNA5O15131 536 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 PEX14O75381 377 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 WDR47O94967 919 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 PLAUP00749 431 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ALPLP05186 524 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 TNFRSF1BP20333 461 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 DRD1P21728 446 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 TKTP29401 623 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 IDUAP35475 653 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 HTR6P50406 440 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 JAK3P52333 1124 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 NANOS2P60321 138 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 FAM193AP78312 1265 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 RAPGEF1Q13905 1077 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 GBX1Q14549 363 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ODF3L2Q3SX64 289 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 AASDHQ4L235 1098 aaPredicted RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 C4orf46Q504U0 113 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 CRTC1Q6UUV9 634 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 COLCA1Q6ZS62 124 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 SRGAP1Q7Z6B7 1085 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 CCAR1Q8IX12 1150 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 NSMCE1Q8WV22 266 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 MSLNLQ96KJ4 702 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ARNT2Q9HBZ2 717 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 PRDM11Q9NQV5 511 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ZBTB40Q9NUA8 1239 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 POT1Q9NUX5 634 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF580Q9UK33 172 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 COL15A1P39059 1388 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 CRYABP02511 175 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 HRGP04196 525 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 MYL1P05976 194 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 TMEM191BP0C7N4 346 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 HOXA7P31268 230 aaPredicted RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 PIK3CBP42338 1070 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ME1P48163 572 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 VPS41P49754 854 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 RPS13P62277 151 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 DNASE1L3Q13609 305 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 CCSAPQ6IQ19 270 aaPredicted RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ANO7Q6IWH7 933 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 ZDHHC17Q8IUH5 632 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 NGDNQ8NEJ9 315 aaKnown RBP2.61□□□□□ -1.99
VPS13A-206ENST00000376646 SUN3Q8TAQ9 357 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 CAPN11Q9UMQ6 739 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 COG5Q9UP83 839 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 LRP12Q9Y561 859 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 HS3ST3B1Q9Y662 390 aa2.61□□□□□ -1.99
VPS13A-206ENST00000376646 TTBK1Q5TCY1 1321 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 IGKV2D-30A0A075B6S6 120 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 PRYO14603 147 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 CBFA2T3O75081 653 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 CNOT3O75175 753 aaKnown RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 ANXA2P07355 339 aaKnown RBP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 ALADP13716 330 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 CCKBRP32239 447 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 GPS1Q13098 491 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 MTA1Q13330 715 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 BFSP2Q13515 415 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 HLTFQ14527 1009 aaKnown RBP eCLIP2.6□□□□□ -1.99
VPS13A-206ENST00000376646 ABLIM2Q6H8Q1 611 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 PELI3Q8N2H9 469 aa2.6□□□□□ -1.99
VPS13A-206ENST00000376646 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms