RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MBLAC2Q68D91 279 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 SMYD5Q6GMV2 418 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TIFABQ6ZNK6 161 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 WNK4Q96J92 1243 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TEPSINQ96N21 525 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 RPAP3Q9H6T3 665 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 MYOZ2Q9NPC6 264 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 NXF1Q9UBU9 619 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 VWA5AO00534 786 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 MTMR2Q13614 643 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 TEDDM1Q5T9Z0 273 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 DPY19L2Q6NUT2 758 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 DENND5BQ6ZUT9 1274 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 NCAPG2Q86XI2 1143 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 MCUQ8NE86 351 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 ACTRT2Q8TDY3 377 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 ZNF526Q8TF50 670 aaPredicted RBP21.86■■□□□ 1.09
UPF3A-202ENST00000375299 ATG4CQ96DT6 458 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 ADPGKQ9BRR6 497 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 MIS12Q9H081 205 aa21.86■■□□□ 1.09
UPF3A-202ENST00000375299 TNS1Q9HBL0 1735 aaKnown RBP21.86■■□□□ 1.09
UPF3A-202ENST00000375299 PDE5AO76074 875 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 GSRP00390 522 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 VCLP18206 1134 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 GABRB2P47870 512 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 ZNF143P52747 638 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 MAP3K21Q5TCX8 1036 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SDCCAG8Q86SQ7 713 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 PLD5Q8N7P1 536 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 TRIM56Q9BRZ2 755 aaKnown RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 CDH22Q9UJ99 828 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 COL11A1P12107 1806 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SPATA31C2B4DYI2 1134 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SIN3BO75182 1162 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SORBS2O94875 1100 aaKnown RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 FGF3P11487 239 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SLC1A6P48664 564 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 DLG1Q12959 904 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 STXBP5Q5T5C0 1151 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 FAM102AQ5T9C2 384 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SH3PXD2AQ5TCZ1 1133 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 DEPDC1BQ8WUY9 529 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SIGLEC10Q96LC7 697 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 MAD1L1Q9Y6D9 718 aa21.85■■□□□ 1.09
UPF3A-202ENST00000375299 SF3B1O75533 1304 aaKnown RBP eCLIP21.85■■□□□ 1.09
UPF3A-202ENST00000375299 OGTO15294 1046 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 PROCP04070 461 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 HOXC6P09630 235 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 GPD1P21695 349 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 MAGEA3P43357 314 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 RPL10AP62906 217 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 ORC1Q13415 861 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 KRT81Q14533 505 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 RAB6CQ53S08 254 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 ZNF534Q76KX8 674 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 CCDC33Q8N5R6 958 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 FAM81AQ8TBF8 368 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 PIP4K2CQ8TBX8 421 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 MMP19Q99542 508 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 EBNA1BP2Q99848 306 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 MRPL4Q9BYD3 311 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 RAB6CQ9H0N0 254 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 CPSF3Q9UKF6 684 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 PCDHA11Q9Y5I1 949 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 SMIM31A0A1B0GVY4 71 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 BCLAF3A2AJT9 711 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 CREB3O43889 395 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 TGM2P21980 687 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 CNTFP26441 200 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 MMEL1Q495T6 779 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 ILDR2Q71H61 639 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 NIFKQ9BYG3 293 aaKnown RBP21.84■■□□□ 1.09
UPF3A-202ENST00000375299 VPS33BQ9H267 617 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 HEY1Q9Y5J3 304 aa21.84■■□□□ 1.09
UPF3A-202ENST00000375299 APOL1O14791 398 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 MSCO60682 206 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 MICAL2O94851 1124 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 PDK3Q15120 406 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 TRIP10Q15642 601 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 ANKRD20A4Q4UJ75 823 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 C16orf46Q6P387 395 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 MPP5Q8N3R9 675 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 USP6NLQ92738 828 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 CCDC124Q96CT7 223 aaKnown RBP21.83■■□□□ 1.09
UPF3A-202ENST00000375299 CNPY3Q9BT09 278 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 OCEL1Q9H607 264 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 DNAJC28Q9NX36 388 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 ATXN10Q9UBB4 475 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 EMCNQ9ULC0 261 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 POMPQ9Y244 141 aa21.83■■□□□ 1.09
UPF3A-202ENST00000375299 CASQ2O14958 399 aaPredicted RBP21.83■■□□□ 1.08
UPF3A-202ENST00000375299 TNNC2P02585 160 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 RAG1P15918 1043 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 SP2Q02086 613 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 MAVSQ7Z434 540 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 SPATA24Q86W54 205 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 MAP7D3Q8IWC1 876 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 EPB41L1Q9H4G0 881 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 FAM96AQ9H5X1 160 aa21.83■■□□□ 1.08
UPF3A-202ENST00000375299 NRDE2Q9H7Z3 1164 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms