RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 IGLV3-19P01714 112 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 ACADMP11310 421 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 TPMTP51580 245 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 CDH8P55286 799 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 BIRC3Q13489 604 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 ENPP2Q13822 863 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 EPM2AIP1Q7L775 607 aaPredicted RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 TMPRSS6Q8IU80 811 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 SCUBE3Q8IX30 993 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 ZMIZ2Q8NF64 920 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 SLC2A14Q8TDB8 520 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 ZNF516Q92618 1163 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 HPS3Q969F9 1004 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 TRIM9Q9C026 710 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 MKRN2Q9H000 416 aaKnown RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 IL21RQ9HBE5 538 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 TOR4AQ9NXH8 423 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 THAP10Q9P2Z0 257 aaPredicted RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 DNMT3LQ9UJW3 386 aa14.59□□□□□ -0.07
VPS29-201ENST00000360579 FNDC3AQ9Y2H6 1198 aaKnown RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 FLNBO75369 2602 aaKnown RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 HELZ2Q9BYK8 2649 aaKnown RBP14.59□□□□□ -0.07
VPS29-201ENST00000360579 A0A087WV48 116 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 A0A087X0B3 334 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 E9PAM4 449 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 CLIC2O15247 247 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 CD2BP2O95400 341 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 ATXN1LP0C7T5 689 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 FAM200BP0CF97 657 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 ACO1P21399 889 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 CHKAP35790 457 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 PGFP49763 221 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 PSEN1P49768 467 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 AFF3P51826 1226 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 MAP3K7CLP57077 242 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 ASIC1P78348 528 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 CEBPZQ03701 1054 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 NCOA4Q13772 614 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 EIF4HQ15056 248 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 BMT2Q1RMZ1 405 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 FAM26FQ5R3K3 315 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 Q6ZNB5 142 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 ACOT1Q86TX2 421 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 C12orf56Q8IXR9 622 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 CRYBG2Q8N1P7 616 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 PDILTQ8N807 584 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 BHMTQ93088 406 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 BBC3Q96PG8 261 aaPredicted RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 CDK5RAP1Q96SZ6 601 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 KBTBD4Q9NVX7 518 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 PLK2Q9NYY3 685 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 EIF2B4Q9UI10 523 aaKnown RBP14.58□□□□□ -0.08
VPS29-201ENST00000360579 PCDHA5Q9Y5H7 936 aa14.58□□□□□ -0.08
VPS29-201ENST00000360579 TRABD2BA6NFA1 517 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 KCNJ18B7U540 433 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 TNFSF14O43557 240 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 EXOC3O60645 756 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 BEST1O76090 585 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 PENKP01210 267 aaPredicted RBP14.57□□□□□ -0.08
VPS29-201ENST00000360579 RARGP13631 454 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 CCDC130P13994 396 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 IL12RB1P42701 662 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 MFAP3P55082 362 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 CYP4F3Q08477 520 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 SLC39A14Q15043 492 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 TEAD4Q15561 434 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 C8orf34Q49A92 452 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 C10orf120Q5SQS8 335 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 CNNM4Q6P4Q7 775 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 SCARA5Q6ZMJ2 495 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 ANKS1BQ7Z6G8 1248 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 UNC93AQ86WB7 457 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 PDCD7Q8N8D1 485 aaKnown RBP14.57□□□□□ -0.08
VPS29-201ENST00000360579 DCLK3Q9C098 648 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 GZF1Q9H116 711 aaPredicted RBP14.57□□□□□ -0.08
VPS29-201ENST00000360579 PNPLA8Q9NP80 782 aa14.57□□□□□ -0.08
VPS29-201ENST00000360579 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS29-201ENST00000360579 PLXNB3Q9ULL4 1909 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 CYP26A1O43174 497 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 STX6O43752 255 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 STC2O76061 302 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 GRK6P43250 576 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 COG7P83436 770 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 BNC1Q01954 994 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 ORC1Q13415 861 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 SMAD1Q15797 465 aaKnown RBP14.56□□□□□ -0.08
VPS29-201ENST00000360579 SGSM1Q2NKQ1 1148 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 INAVAQ3KP66 663 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 FYB2Q5VWT5 728 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 NELFCDQ8IXH7 590 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 ZNF276Q8N554 614 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 C1orf216Q8TAB5 229 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 GOLGA5Q8TBA6 731 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 TAF4BQ92750 862 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 UBL7Q96S82 380 aaPredicted RBP14.56□□□□□ -0.08
VPS29-201ENST00000360579 OSGEPQ9NPF4 335 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 OSER1Q9NX31 292 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 ELOVL2Q9NXB9 296 aa14.56□□□□□ -0.08
VPS29-201ENST00000360579 TFIP11Q9UBB9 837 aaKnown RBP14.56□□□□□ -0.08
VPS29-201ENST00000360579 URB1O60287 2271 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms