RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 RETP07949 1114 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 MYBP10242 640 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 TDGF1P13385 188 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 TRIM21P19474 475 aaKnown RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 GARTP22102 1010 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 GTF2H1P32780 548 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ARL2P36404 184 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 KIR3DL1P43629 444 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 NPTX2P47972 431 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 GPC3P51654 580 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 CDC42EP1Q00587 391 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 POU5F1Q01860 360 aaKnown RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 LPAL2Q16609 132 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZBTB41Q5SVQ8 909 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 CDCA2Q69YH5 1023 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SLFN12LQ6IEE8 588 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 PARM1Q6UWI2 310 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZPBP2Q6X784 338 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 HAUS6Q7Z4H7 955 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZNF280BQ86YH2 543 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 MRPL41Q8IXM3 137 aaKnown RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 TXLNBQ8N3L3 684 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 LRRC71Q8N4P6 559 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ST13P5Q8NFI4 369 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 HDAC7Q8WUI4 952 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 LPPQ93052 612 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 CLDN23Q96B33 292 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZNF668Q96K58 619 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 COX4I2Q96KJ9 171 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SCLT1Q96NL6 688 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ALPK1Q96QP1 1244 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 RPS6KC1Q96S38 1066 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 BAG1Q99933 345 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 RPP25Q9BUL9 199 aaKnown RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 FGFBP2Q9BYJ0 223 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 C2orf40Q9H1Z8 148 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 XPNPEP1Q9NQW7 623 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 CHST12Q9NRB3 414 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SEMA4GQ9NTN9 838 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ABHD10Q9NUJ1 306 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SSX2IPQ9Y2D8 614 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SIK3Q9Y2K2 1263 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 LUC7L2Q9Y383 392 aaKnown RBP7.45□□□□□ -1.22
VPS13A-201ENST00000355766 STYXL1Q9Y6J8 313 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZFYVE26Q68DK2 2539 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ATP8B3O60423 1300 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 MEIS3P2A8K0S8 358 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 ZZEF1O43149 2961 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TEX33O43247 280 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 FOXD2O60548 495 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 OFD1O75665 1012 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 AKAP3O75969 853 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PRPF6O94906 941 aaKnown RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 C1RP00736 705 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 AFPP02771 609 aaKnown RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PGRP06401 933 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TMOD1P28289 359 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 NMT1P30419 496 aaKnown RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 RAP1GAPP47736 663 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 GLUD2P49448 558 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 RAB27AP51159 221 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TERF1P54274 439 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PFKPQ01813 784 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 RAD51AP2Q09MP3 1159 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CETN1Q12798 172 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TFDP1Q14186 410 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 NOLC1Q14978 699 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CSRP2Q16527 193 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 SLC44A4Q53GD3 710 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 N4BP2L1Q5TBK1 243 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PLA2G4FQ68DD2 849 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 EFCAB12Q6NXP0 572 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 ZNF662Q6ZS27 426 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TPRG1Q6ZUI0 275 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 MTSS1LQ765P7 747 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TMEM139Q8IV31 216 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 NELFCDQ8IXH7 590 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CCDC170Q8IYT3 715 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 RNF168Q8IYW5 571 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 SYCP3Q8IZU3 236 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CELF5Q8N6W0 485 aaKnown RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 XXYLT1Q8NBI6 393 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 OR8K1Q8NGG5 319 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 URGCPQ8TCY9 931 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PSPC1Q8WXF1 523 aaKnown RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 SLC35C1Q96A29 364 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 FAM81BQ96LP2 452 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TMEM175Q9BSA9 504 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 POLR3FQ9H1D9 316 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-201ENST00000355766 MIR1-1HGQ9H1L0 117 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 VPS16Q9H269 839 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PLEKHA4Q9H4M7 779 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 RXFP1Q9HBX9 757 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 KMT5AQ9NQR1 393 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 MARCH5Q9NX47 278 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 SLAMF8Q9P0V8 285 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CEP72Q9P209 647 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 CDH7Q9ULB5 785 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 TBX20Q9UMR3 447 aa7.44□□□□□ -1.22
VPS13A-201ENST00000355766 PIN4Q9Y237 131 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms