RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TCEAL1Q15170 157 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 GALNTL6Q49A17 601 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 SCARA5Q6ZMJ2 495 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 SIX5Q8N196 739 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 TGS1Q96RS0 853 aaKnown RBP10.5□□□□□ -0.73
SYNE1-203ENST00000354674 FMO2Q99518 471 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 ZSWIM1Q9BR11 485 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 CNOT10Q9H9A5 744 aaKnown RBP10.5□□□□□ -0.73
SYNE1-203ENST00000354674 MRGBPQ9NV56 204 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM161AQ9NX61 479 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 TAS2R14Q9NYV8 317 aa10.5□□□□□ -0.73
SYNE1-203ENST00000354674 WDR91A4D1P6 747 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 KPNA7A9QM74 516 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 EIF3FO00303 357 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TBX10O75333 385 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 UNC5CO95185 931 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CLTBP09497 229 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 GNA15P30679 374 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 VHLP40337 213 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CPA2P48052 419 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TAF6P49848 677 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 LILRA4P59901 499 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CLEC16AQ2KHT3 1053 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SV2CQ496J9 727 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 LIN52Q52LA3 116 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CCDC80Q76M96 950 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SLC4A11Q8NBS3 891 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CEP295NLQ96MC4 621 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SLCO1B3Q9NPD5 702 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CTTNBP2NLQ9P2B4 639 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 PCDHGC3Q9UN70 934 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 LZTS1Q9Y250 596 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ARL2BPQ9Y2Y0 163 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 A0A0A6YYK5 440 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM247A6NEH6 219 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CALCAP01258 141 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM253P0C7T8 217 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 VAV1P15498 845 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CD58P19256 250 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 RFC2P35250 354 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF211Q13398 564 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CNGA2Q16280 664 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 UPP1Q16831 310 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SOWAHAQ2M3V2 549 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CLLU1OSQ5K130 101 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 NECAB2Q7Z6G3 386 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF554Q86TJ5 538 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TREML1Q86YW5 311 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SLC25A41Q8N5S1 370 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF606Q8WXB4 792 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM106CQ9BVX2 250 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ELOVL4Q9GZR5 314 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 RXFP1Q9HBX9 757 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TDRD15B5MCY1 1934 aaKnown RBP10.49□□□□□ -0.73
SYNE1-203ENST00000354674 FOXD2O60548 495 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-203ENST00000354674 H2AFZP0C0S5 128 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 COL6A2P12110 1019 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ATP6V1B1P15313 513 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 CYP2C18P33260 490 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 GALCP54803 685 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 DNAJC3Q13217 504 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 LSAMPQ13449 338 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 MAP7Q14244 749 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 RPS6KA1Q15418 735 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 PAOXQ6QHF9 649 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TRIM72Q6ZMU5 477 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 H2AFVQ71UI9 128 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 DPH6Q7L8W6 267 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 KBTBD7Q8WVZ9 684 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SCLYQ96I15 445 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 TWNKQ96RR1 684 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 MCOLN1Q9GZU1 580 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ARMC7Q9H6L4 198 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 ATP11BQ9Y2G3 1177 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 SNX9Q9Y5X1 595 aa10.49□□□□□ -0.73
SYNE1-203ENST00000354674 NCANO14594 1321 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 LTBP2Q14767 1821 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 MYOCOSA0A1B0GUC4 107 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-203ENST00000354674 ANKRD62A6NC57 917 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 KIAA0355O15063 1070 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 STAMBPO95630 424 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TNFRSF8P28908 595 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 STX2P32856 288 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CDH5P33151 784 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CCNG1P51959 295 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 ACAD10Q6JQN1 1059 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 CD300LGQ6UXG3 332 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 IZUMO2Q6UXV1 221 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 LRRC74BQ6ZQY2 392 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 GET4Q7L5D6 327 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-203ENST00000354674 UNC93AQ86WB7 457 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 WDR75Q8IWA0 830 aaKnown RBP10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TOP6BLQ8N6T0 577 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 PPFIBP2Q8ND30 876 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TFAP2BQ92481 460 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 ZNF653Q96CK0 615 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM176AQ96HP8 235 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 UROC1Q96N76 676 aa10.48□□□□□ -0.73
SYNE1-203ENST00000354674 STOML1Q9UBI4 398 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms