RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TSPAN4O14817 238 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ITGA2P17301 1181 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 RAD51Q06609 339 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 HECTD3Q5T447 861 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 STOX1Q6ZVD7 989 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 NCCRP1Q6ZVX7 275 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 IFNEQ86WN2 208 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 KCNB2Q92953 911 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF518BQ9C0D4 1074 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 KIAA1683Q9H0B3 1180 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ANAPC2Q9UJX6 822 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 LSM8O95777 96 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 BOLA3Q53S33 107 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 PSMD13Q9UNM6 376 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 MPZL2O60487 215 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ABATP80404 500 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 FOLH1Q04609 750 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 NSMFQ6X4W1 530 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TCF12Q99081 682 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 CHMP1AQ9HD42 196 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF224Q9NZL3 707 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 CCNG2Q16589 344 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 HELQQ8TDG4 1101 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 YTHDF1Q9BYJ9 559 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 OR2B2Q9GZK3 357 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TMEM216Q9P0N5 145 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TESPA1A2RU30 521 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TGM2P21980 687 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 HSD17B12Q53GQ0 312 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 DNAJB7Q7Z6W7 309 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 PPP1R36Q96LQ0 422 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 M0R2C6 588 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 S100A2P29034 98 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ACADSBP45954 432 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 PIK3CGP48736 1102 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 SHC4Q6S5L8 630 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 SLC44A2Q8IWA5 706 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 RNF25Q96BH1 459 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF285Q96NJ3 590 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 GPATCH1Q9BRR8 931 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ANO3Q9BYT9 981 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 SP110Q9HB58 689 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 DUSP12Q9UNI6 340 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 CLIC2O15247 247 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 MCFD2Q8NI22 146 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TTYH1Q9H313 450 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 RIBC2Q9H4K1 309 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 PRDM8Q9NQV8 689 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 F8W810 466 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 DDX3XO00571 662 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 FXR1P51114 621 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ANKRD26P1Q6NSI1 321 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TTC29Q8NA56 475 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 C9orf72Q96LT7 481 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 CHP1Q99653 195 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TMEM165Q9HC07 324 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ALG13Q9NP73 1137 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 ERVV-2B6SEH9 535 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TMCC2O75069 709 aa12.93□□□□□ -0.34
COL6A3-203ENST00000353578 BST2Q10589 180 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 TIGD7Q6NT04 549 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 CXXC5Q7LFL8 322 aaKnown RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 BARX2Q9UMQ3 279 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-203ENST00000353578 BBIP1A8MTZ0 92 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SASH3O75995 380 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 RORAP35398 523 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 HNF4AP41235 474 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MFSD5Q6N075 450 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF420Q8TAQ5 688 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 GCNAQ96QF7 691 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SUGCTQ9HAC7 445 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MAGEC1O60732 1142 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 EFNA5P52803 228 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 LRRC41Q15345 812 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SPERTQ8NA61 448 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 OR2W6PQ8NHA6 318 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 BTNL10A8MVZ5 291 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 CRABP2P29373 138 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 RHAGQ02094 409 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MTX3Q5HYI7 312 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MTG1Q9BT17 334 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 SRP68Q9UHB9 627 aaKnown RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 NDUFAF1Q9Y375 327 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MAP3K4Q9Y6R4 1608 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 PGK2P07205 417 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 PRDX6P30041 224 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 NAMPTP43490 491 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MMP13P45452 471 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 NR2C2P49116 596 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 TTLL9Q3SXZ7 439 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF75CPQ92670 426 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ADPRHL2Q9NX46 363 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 ALG6Q9Y672 507 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 hCG_1642624A0A1W2PR95 340 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 PCP4L1A6NKN8 68 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 MYCP01106 439 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 CPA2P48052 419 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 PHC1P78364 1004 aa12.92□□□□□ -0.34
COL6A3-203ENST00000353578 FAM102AQ5T9C2 384 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-203ENST00000353578 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms