RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF560Q96MR9 790 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 EPB41L3Q9Y2J2 1087 aaPredicted RBP22.57■■□□□ 1.2
SHMT1-202ENST00000352886 GCATO75600 419 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 IBSPP21815 317 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 PRKCHP24723 683 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 SCNN1AP37088 669 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 NR2C2P49116 596 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 RPL34P49207 117 aaKnown RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 HIC1Q14526 733 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 ZNF534Q76KX8 674 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 APPL2Q8NEU8 664 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 RFWD2Q8NHY2 731 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 TSSK1BQ9BXA7 367 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 RNF39Q9H2S5 420 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 MYO18AQ92614 2054 aaKnown RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 MBLAC1A4D2B0 266 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 DCAF8L1A6NGE4 600 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 TRDMT1O14717 391 aaKnown RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 EZRP15311 586 aaKnown RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 ACADSBP45954 432 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 UNC5AQ6ZN44 842 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 PYROXD2Q8N2H3 581 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 ZNF398Q8TD17 642 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 AGAP11Q8TF27 550 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 LRRC39Q96DD0 335 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 TRIM56Q9BRZ2 755 aaKnown RBP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 LRMDAQ9H2I8 198 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 SMYD2Q9NRG4 433 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 GDAP2Q9NXN4 497 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.56■■□□□ 1.2
SHMT1-202ENST00000352886 MFHAS1Q9Y4C4 1052 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 MAD1L1Q9Y6D9 718 aa22.56■■□□□ 1.2
SHMT1-202ENST00000352886 KRT37O76014 449 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 APOEP02649 317 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 GOT1P17174 413 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 MAGEA3P43357 314 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 SOX4Q06945 474 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 TAF1BQ53T94 588 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 NCBP2-AS2Q69YL0 99 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 HEATR6Q6AI08 1181 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 ZNF449Q6P9G9 518 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 CHSY1Q86X52 802 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 QKIQ96PU8 341 aaKnown RBP eCLIP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 DTLQ9NZJ0 730 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 ZNF180Q9UJW8 692 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 ZNF638Q14966 1978 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 COPEO14579 308 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 SNRPAP09012 282 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 NEFHP12036 1026 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 AMPD1P23109 780 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 TKTP29401 623 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 AXLP30530 894 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 TAF6P49848 677 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 SNX17Q15036 470 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 CCDC91Q7Z6B0 441 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 FAM131BQ86XD5 332 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 MPP5Q8N3R9 675 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 UTP4Q969X6 686 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 LENG1Q96BZ8 264 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 HSFY1Q96LI6 401 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 RAB3IPQ96QF0 476 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 IQCGQ9H095 443 aaKnown RBP22.55■■□□□ 1.2
SHMT1-202ENST00000352886 GTF2IRD1Q9UHL9 959 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 ZFP69BQ9UJL9 534 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 CLEC11AQ9Y240 323 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 L3MBTL1Q9Y468 752 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 NR2E3Q9Y5X4 410 aa22.55■■□□□ 1.2
SHMT1-202ENST00000352886 DOCK3Q8IZD9 2030 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 UGT1A9O60656 530 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 CBX6O95503 412 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 T-ENOLP0DO92 83 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 PNPLA4P41247 253 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 CDHR3Q6ZTQ4 885 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 MTDHQ86UE4 582 aaKnown RBP22.54■■□□□ 1.2
SHMT1-202ENST00000352886 SIGLEC10Q96LC7 697 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 SRPK1Q96SB4 655 aaKnown RBP22.54■■□□□ 1.2
SHMT1-202ENST00000352886 SYT17Q9BSW7 474 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 UGT1A7Q9HAW7 530 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 UGT1A10Q9HAW8 530 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 UGT1A8Q9HAW9 530 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 SLC5A4Q9NY91 659 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 KANSL3Q9P2N6 904 aa22.54■■□□□ 1.2
SHMT1-202ENST00000352886 A0A0G2JND7 137 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 TOMM70O94826 608 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 TPSB2P20231 275 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 BGNP21810 368 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 MFSD10Q14728 455 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 TPSAB1Q15661 275 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 FAM110CQ1W6H9 321 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 STRADAQ7RTN6 431 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 ADGRF2Q8IZF7 708 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 NDRG1Q92597 394 aaKnown RBP22.53■■□□□ 1.2
SHMT1-202ENST00000352886 FAM149B1Q96BN6 582 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 TRIM55Q9BYV6 548 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 XPOTO43592 962 aaKnown RBP22.53■■□□□ 1.2
SHMT1-202ENST00000352886 GRIA1P42261 906 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 MATKP42679 507 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 EFHC1Q5JVL4 640 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 TRMT10BQ6PF06 316 aaKnown RBP22.53■■□□□ 1.2
SHMT1-202ENST00000352886 DEFB106AQ8N104 65 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms