RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 TRIM61Q5EBN2 209 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 SH3PXD2AQ5TCZ1 1133 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 RSRC2Q7L4I2 434 aaKnown RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 CCDC186Q7Z3E2 898 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 PHTF2Q8N3S3 785 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 KDF1Q8NAX2 398 aaPredicted RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 SPATA20Q8TB22 786 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 PIGKQ92643 395 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 DHTKD1Q96HY7 919 aaPredicted RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 METTL14Q9HCE5 456 aaKnown RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 DNAJC17Q9NVM6 304 aaKnown RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.04□□□□□ -0.32
SGCA-202ENST00000344627 HESX1Q9UBX0 185 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 SUSD2Q9UGT4 822 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 PILRBQ9UKJ0 227 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 SLC6A14Q9UN76 642 aa13.04□□□□□ -0.32
SGCA-202ENST00000344627 TPRP12270 2363 aaKnown RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 KMT2BQ9UMN6 2715 aaPredicted RBP13.04□□□□□ -0.32
SGCA-202ENST00000344627 GON4LQ3T8J9 2241 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 TCRBV21S2A2A0A5A6 115 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CACNG3O60359 315 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 GADD45BO75293 160 aaPredicted RBP13.03□□□□□ -0.32
SGCA-202ENST00000344627 SYPP08247 313 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 SERPINF2P08697 491 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CHRM1P11229 460 aaPredicted RBP13.03□□□□□ -0.32
SGCA-202ENST00000344627 TYRP14679 529 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CD44P16070 742 aaKnown RBP13.03□□□□□ -0.32
SGCA-202ENST00000344627 CHKAP35790 457 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 PPP1R2P41236 205 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 WASP42768 502 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 IRX4P78413 519 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 EFEMP1Q12805 493 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 SLC14A1Q13336 389 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 SGO2Q562F6 1265 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 C10orf76Q5T2E6 689 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 GRAMD4Q6IC98 578 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 TCEAL6Q6IPX3 200 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 SCD5Q86SK9 330 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 METTL3Q86U44 580 aaKnown RBP13.03□□□□□ -0.32
SGCA-202ENST00000344627 PIGZQ86VD9 579 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 ZC3H3Q8IXZ2 948 aaKnown RBP13.03□□□□□ -0.32
SGCA-202ENST00000344627 ARHGAP18Q8N392 663 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 HDDC3Q8N4P3 179 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 ANKRD52Q8NB46 1076 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 HMGB4Q8WW32 186 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 NELFBQ8WX92 580 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 FOXJ1Q92949 421 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 TCEAL3Q969E4 200 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CEP63Q96MT8 703 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 SMOC1Q9H4F8 434 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 LRRC4Q9HBW1 653 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 STRIP2Q9ULQ0 834 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CTNND2Q9UQB3 1225 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 NFE2L3Q9Y4A8 694 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 PCDHB4Q9Y5E5 795 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 CACNA1BQ00975 2339 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 LAMA1P25391 3075 aa13.03□□□□□ -0.32
SGCA-202ENST00000344627 NUP205Q92621 2012 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 TRIM24O15164 1050 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 ADAM23O75077 832 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 HOXB2P14652 356 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 HNRNPLP14866 589 aaKnown RBP eCLIP13.02□□□□□ -0.33
SGCA-202ENST00000344627 BCKDHBP21953 392 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 TBXAS1P24557 533 aaPredicted RBP13.02□□□□□ -0.33
SGCA-202ENST00000344627 FMO5P49326 533 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 STX17P56962 302 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 YWHAGP61981 247 aaKnown RBP eCLIP13.02□□□□□ -0.33
SGCA-202ENST00000344627 COG7P83436 770 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 GFPT1Q06210 699 aaPredicted RBP13.02□□□□□ -0.33
SGCA-202ENST00000344627 CETN1Q12798 172 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 SYCP2LQ5T4T6 812 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 ARHGAP17Q68EM7 881 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 UNQ6494/PRO21346Q6UXR6 183 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 CREBRFQ8IUR6 639 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 PPM1KQ8N3J5 372 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 NDRG1Q92597 394 aaKnown RBP13.02□□□□□ -0.33
SGCA-202ENST00000344627 SLC35C1Q96A29 364 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 ERLEC1Q96DZ1 483 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 NT5C1BQ96P26 610 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 IPO9Q96P70 1041 aaKnown RBP13.02□□□□□ -0.33
SGCA-202ENST00000344627 GABRG3Q99928 467 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 UBXN6Q9BZV1 441 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 DCLK3Q9C098 648 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 ZDHHC5Q9C0B5 715 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 PLK2Q9NYY3 685 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 CLIC5Q9NZA1 410 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 TSPAN16Q9UKR8 245 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 COQ4Q9Y3A0 265 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 USP3Q9Y6I4 520 aa13.02□□□□□ -0.33
SGCA-202ENST00000344627 SLC12A8A0AV02 714 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 BICDL2A1A5D9 508 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 STC2O76061 302 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 GNSP15586 552 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 ENGP17813 658 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 CORO1AP31146 461 aaKnown RBP13.01□□□□□ -0.33
SGCA-202ENST00000344627 TKTL1P51854 596 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 BCAT1P54687 386 aa13.01□□□□□ -0.33
SGCA-202ENST00000344627 MCCD1P59942 119 aaPredicted RBP13.01□□□□□ -0.33
SGCA-202ENST00000344627 RPL6Q02878 288 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms