RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TNFRSF8P28908 595 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 RDXP35241 583 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 GGCXP38435 758 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TNNT3P45378 269 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 RPL21P46778 160 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 NRLP54845 237 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 YWHAGP61981 247 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 HLTFQ14527 1009 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 DPYSL2Q16555 572 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ANKRD20A8PQ5CZ79 823 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TMEM240Q5SV17 173 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SLC8B1Q6J4K2 584 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 C1orf228Q6PIY5 440 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 VSTM1Q6UX27 236 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ZDHHC24Q6UX98 284 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SND1Q7KZF4 910 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 CCDC33Q8N5R6 958 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NETO2Q8NC67 525 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DQX1Q8TE96 717 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 GIPC2Q8TF65 315 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MAIP1Q8WWC4 291 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PIK3R5Q8WYR1 880 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 IRGQQ8WZA9 623 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SEC14L1Q92503 715 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CASP10Q92851 521 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TMEM169Q96HH4 297 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 C8orf48Q96LL4 319 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 RNF157Q96PX1 679 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ERP44Q9BS26 406 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FAM204AQ9H8W3 233 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 WDR6Q9NNW5 1121 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 PRDM10Q9NQV6 1147 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 GRHL1Q9NZI5 618 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 GMIPQ9P107 970 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PRKAG2Q9UGJ0 569 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SFMBT1Q9UHJ3 866 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FZD10Q9ULW2 581 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 UTP11Q9Y3A2 253 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 NEU2Q9Y3R4 380 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MFHAS1Q9Y4C4 1052 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 COL4A4P53420 1690 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 KIAA1671Q9BY89 1806 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 LCHNA4D1U4 455 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAM72CH0Y354 149 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TRIM66O15016 1216 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TP73O15350 636 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 EFCAB14O75071 495 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 GJB5O95377 273 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SEC24AO95486 1093 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 HAPLN1P10915 354 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 GOT1P17174 413 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 LAG3P18627 525 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ADRA1BP35368 520 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 MAGEA11P43364 429 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 GLUD2P49448 558 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 VCPP55072 806 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 GDF10P55107 478 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PPIGQ13427 754 aaKnown RBP eCLIP4.3□□□□□ -1.72
MCF2-201ENST00000338585 BYSLQ13895 437 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 PDK2Q15119 407 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PPP1R7Q15435 360 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 OASLQ15646 514 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAM72AQ5TYM5 149 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 BTBD8Q5XKL5 378 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAM72DQ6L9T8 149 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SPRED2Q7Z698 418 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZC3H18Q86VM9 953 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAM72BQ86X60 149 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 NUP93Q8N1F7 819 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SCML4Q8N228 414 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PLD5Q8N7P1 536 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TSEN2Q8NCE0 465 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 ATL2Q8NHH9 583 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SLC35B2Q8TB61 432 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAM71BQ8TC56 605 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SPPL2BQ8TCT7 592 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 RUBCNQ92622 972 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SLCO2A1Q92959 643 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 CSPG4P5Q96PW8 444 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TMEM121Q9BTD3 319 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 RAB17Q9H0T7 212 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 OCEL1Q9H607 264 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ETNK2Q9NVF9 386 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 SPG21Q9NZD8 308 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 CWC15Q9P013 229 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZNF148Q9UQR1 794 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 EFR3BQ9Y2G0 817 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 HEY1Q9Y5J3 304 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 BACE2Q9Y5Z0 518 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZNF638Q14966 1978 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 APOC4-APOC2K7ER74 178 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 APOL1O14791 398 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 CREB3O43889 395 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FGF18O76093 207 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TBX18O95935 607 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 IGLV3-25P01717 112 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 APOC2P02655 101 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 AMPD1P23109 780 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 IVDP26440 423 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms