RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DEFB106AQ8N104 65 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 OLIG1Q8TAK6 271 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 ADAM32Q8TC27 787 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC2A13Q96QE2 648 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 ECT2Q9H8V3 914 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 HBS1LQ9Y450 684 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 OTOL1A6NHN0 477 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 TMCO5BA8MYB1 307 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 DAB1O75553 588 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 CD72P21854 359 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 ZNF75DP51815 510 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 RNASE9P60153 205 aaKnown RBP16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 HGSNATQ68CP4 663 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 PHLDB2Q86SQ0 1253 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 TAC4Q86UU9 113 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 OTUB2Q96DC9 234 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 SERPINB11Q96P15 392 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 DCLK3Q9C098 648 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 C8orf33Q9H7E9 229 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 ADAM22Q9P0K1 906 aa16.58■□□□□ 0.24
CCDC28A-201ENST00000332797 SPECC1L-ADORA2AF8WAN1 911 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 KLKB1P03952 638 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 CYP17A1P05093 508 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 SERPING1P05155 500 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 CALB1P05937 261 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 GLULP15104 373 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 CTHP32929 405 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 SCNN1AP37088 669 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 TBX4P57082 545 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 STARD6P59095 220 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 CDK17Q00537 523 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 NR1H3Q13133 447 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 TRIP4Q15650 581 aaPredicted RBP16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 ZNF852Q6ZMS4 543 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 Q6ZNB5 142 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 PHF13Q86YI8 300 aaPredicted RBP16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 DENND1CQ8IV53 801 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 ADGRG2Q8IZP9 1017 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 MSANTD3Q96H12 275 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 FOXQ1Q9C009 403 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 FAM204AQ9H8W3 233 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 METTL5Q9NRN9 209 aaKnown RBP16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 TAS2R14Q9NYV8 317 aa16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 BZW2Q9Y6E2 419 aaKnown RBP16.57■□□□□ 0.24
CCDC28A-201ENST00000332797 SYNJ2BP-COX16A0A087WUM0 186 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 KANSL1LA0AUZ9 987 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 PRR33A8MZF0 331 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 DDX3XO00571 662 aaKnown RBP eCLIP16.56■□□□□ 0.247e-17■■■■■ 43.9
CCDC28A-201ENST00000332797 MAN2B1O00754 1011 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 TRUB2O95900 331 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 PLEKP08567 350 aaPredicted RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 GJA4P35212 333 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 HARS2P49590 506 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 MLLT6P55198 1093 aaPredicted RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 PITX1P78337 314 aaPredicted RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 PTP4A2Q12974 167 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 UBXN2BQ14CS0 331 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 DHCR24Q15392 516 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 CWF19L1Q69YN2 538 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 ACAD10Q6JQN1 1059 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 MON1BQ7L1V2 547 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 BMP8AQ7Z5Y6 402 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 RALGPS2Q86X27 583 aaPredicted RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 FBXL6Q8N531 539 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 FAM3CQ92520 227 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 MRFAP1L1Q96HT8 127 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 DDX23Q9BUQ8 820 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 COX16Q9P0S2 106 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 AGO1Q9UL18 857 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 NDRG2Q9UN36 371 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 ZNF510Q9Y2H8 683 aa16.56■□□□□ 0.24
CCDC28A-201ENST00000332797 SHISA7A6NL88 538 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 MFAP3LO75121 409 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 ADH1CP00326 375 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 IGLV3-27P01718 113 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 NOS2P35228 1153 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 MATKP42679 507 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 ADKP55263 362 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 C1QBPQ07021 282 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 NNTQ13423 1086 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 LY6G5CQ5SRR4 150 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 PPP1R2P3Q6NXS1 205 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 RHBDF2Q6PJF5 856 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 TXNDC11Q6PKC3 985 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 VPS36Q86VN1 386 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 SUGP1Q8IWZ8 645 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 OR8K1Q8NGG5 319 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 DNAJC7Q99615 494 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 LTB4R2Q9NPC1 389 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 SPHK2Q9NRA0 654 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 DDIT4Q9NX09 232 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 WDR35Q9P2L0 1181 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 TLR6Q9Y2C9 796 aa16.55■□□□□ 0.24
CCDC28A-201ENST00000332797 IRAK2O43187 625 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 GJB6O95452 261 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 IGLV3-25P01717 112 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ADH5P11766 374 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 HNRNPH3P31942 346 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms