RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NPY6RQ99463 290 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.44□□□□□ -0.741e-5■■□□□ 14.4
HMGB3-201ENST00000325307 HSFX1Q9UBD0 423 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RNF14Q9UBS8 474 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 CES2O00748 559 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RALAP11233 206 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RDXP35241 583 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 CCDC149Q6ZUS6 474 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 STRADAQ7RTN6 431 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 POLNQ7Z5Q5 900 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RBM23Q86U06 439 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 TDHQ8IZJ6 230 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 HDAC7Q8WUI4 952 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RBM41Q96IZ5 413 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 PEBP4Q96S96 227 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 HEMGNQ9BXL5 484 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 ADAM33Q9BZ11 813 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 GPATCH2LQ9NWQ4 482 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RRN3Q9NYV6 651 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 IRAK3Q9Y616 596 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 PLXNA4Q9HCM2 1894 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 H3BNC9 293 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 C8AP07357 584 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RARAP10276 462 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 GBP1P32455 592 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 KRT81Q14533 505 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 ZC3H12AQ5D1E8 599 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 KAZNQ674X7 775 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RINLQ6ZS11 566 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 RCOR2Q8IZ40 523 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 EXD1Q8NHP7 514 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 DQX1Q8TE96 717 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 NAP1L3Q99457 506 aaPredicted RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 AP1M1Q9BXS5 423 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 CALN1Q9BXU9 219 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 NACA2Q9H009 215 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 ARFGAP3Q9NP61 516 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 KRIT1O00522 736 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 BOLA3Q53S33 107 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 C10orf120Q5SQS8 335 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 TAC4Q86UU9 113 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 GDPD5Q8WTR4 605 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 RAPGEF5Q92565 580 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 CENPIQ92674 756 aaPredicted RBP10.43□□□□□ -0.74
HMGB3-201ENST00000325307 PIGVQ9NUD9 493 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 COMMD8Q9NX08 183 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 OSER1Q9NX31 292 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 SFMBT1Q9UHJ3 866 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 MAFFQ9ULX9 164 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 PER2O15055 1255 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 RARGP13631 454 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 CDH6P55285 790 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 ITIH3Q06033 890 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 EFEMP1Q12805 493 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 CAMK1Q14012 370 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 PPP6R3Q5H9R7 873 aaPredicted RBP10.43□□□□□ -0.74
HMGB3-201ENST00000325307 DNAJB7Q7Z6W7 309 aaPredicted RBP10.43□□□□□ -0.74
HMGB3-201ENST00000325307 ITIH5Q86UX2 942 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 ELMOD1Q8N336 334 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 SPATA4Q8NEY3 305 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 ACTRT1Q8TDG2 376 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 CEP295NLQ96MC4 621 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 SNRNP25Q9BV90 132 aaKnown RBP10.43□□□□□ -0.74
HMGB3-201ENST00000325307 DHX35Q9H5Z1 703 aaKnown RBP10.43□□□□□ -0.74
HMGB3-201ENST00000325307 IL37Q9NZH6 218 aa10.43□□□□□ -0.74
HMGB3-201ENST00000325307 ERICH4A6NGS2 130 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MSI1O43347 362 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 KIF1CO43896 1103 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 ZMYND10O75800 440 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 F9P00740 461 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 PPM1LQ5SGD2 360 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 CHRDL2Q6WN34 429 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MIB1Q86YT6 1006 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 CCDC185Q8N715 623 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 NT5C3BQ969T7 300 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 RASSF4Q9H2L5 321 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TRPM5Q9NZQ8 1165 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 FBXW11Q9UKB1 542 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 H3BQF6 201 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TUBB4BP68371 445 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 ERMARDQ5T6L9 678 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 OTUD1Q5VV17 481 aaPredicted RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MFSD7Q6UXD7 560 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MAP7D3Q8IWC1 876 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 GSPT2Q8IYD1 628 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 RASGEF1CQ8N431 466 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MMGT1Q8N4V1 131 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 PDZD8Q8NEN9 1154 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 CASP10Q92851 521 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 RPGRIP1Q96KN7 1286 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TTLL2Q9BWV7 592 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 OSBPL8Q9BZF1 889 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 WDCPQ9H6R7 721 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 RBM12Q9NTZ6 932 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 CHD7Q9P2D1 2997 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 AP4E1Q9UPM8 1137 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 PDE4DIPQ5VU43 2346 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MYO9BQ13459 2157 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 GOLGA6L10A0A0M3HER8 536 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms