RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TP73O15350 636 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TSPAN3O60637 253 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 RPS6KA5O75582 802 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 ITGB3P05106 788 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 STX5Q13190 355 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 KLHDC7AQ5VTJ3 777 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CITED4Q96RK1 184 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 PABPC3Q9H361 631 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 WHRNQ9P202 907 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 PTCH1Q13635 1447 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 A0A1W2PQC6 194 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 SUPT7LO94864 414 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 MED26O95402 600 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 KLRC1P26715 233 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CSHL1Q14406 222 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 RIPOR1Q6ZS17 1223 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 ASB14A6NK59 587 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 GLI1P08151 1106 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 JAK1P23458 1154 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 SLC1A6P48664 564 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 PLK1P53350 603 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 SNX17Q15036 470 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TSNQ15631 228 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 EFCAB12Q6NXP0 572 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TRMT2AQ8IZ69 625 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 ZNF671Q8TAW3 534 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CPB2Q96IY4 423 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CCDC3Q9BQI4 270 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 NFKBIZQ9BYH8 718 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 STON1Q9Y6Q2 735 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 MAP2P11137 1827 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 HK2P52789 917 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TTC39CQ8N584 583 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TMEM106CQ9BVX2 250 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CEP41Q9BYV8 373 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 ERVK-10P10266 1014 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 YWHAQP27348 245 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 PTK6Q13882 451 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TAB1Q15750 504 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 RBM44Q6ZP01 1051 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 PROSER1Q86XN7 944 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 YME1L1Q96TA2 773 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 C7orf25Q9BPX7 421 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 GMEB1Q9Y692 573 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 SHROOM2Q13796 1616 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 IGSF1Q8N6C5 1336 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 VWA5AO00534 786 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 BAIAP3O94812 1187 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TAF1CQ15572 869 aaPredicted RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 SENP2Q9HC62 589 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CMTM6Q9NX76 183 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 A0A087WXM4 84 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 CLK2P49760 499 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 EIF2B5Q13144 721 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 ITGA9Q13797 1035 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 HIST2H2ACQ16777 129 aaPredicted RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 HIST2H2AA3Q6FI13 130 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 C16orf62Q7Z3J2 963 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TSEN2Q8NCE0 465 aaKnown RBP8.11□□□□□ -1.11
CIITA-201ENST00000324288 GIPC3Q8TF64 312 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 FICDQ9BVA6 458 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 TUFT1Q9NNX1 390 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 NLRP1Q9C000 1473 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 EFCAB6Q5THR3 1501 aa8.11□□□□□ -1.11
CIITA-201ENST00000324288 FAM25EA8MYX2 175 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 H2AFYO75367 372 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 VPS26AO75436 327 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 IGKV5-2P06315 115 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KYAT1Q16773 422 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 KLHL12Q53G59 568 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 TBCDQ9BTW9 1192 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 EFCAB1Q9HAE3 211 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 DDIT4Q9NX09 232 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 VAV3Q9UKW4 847 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 RPS6KL1Q9Y6S9 549 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 CCR3P51677 355 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ADRM1Q16186 407 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 NRF1Q16656 503 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 FAM83EQ2M2I3 478 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 N4BP2L1Q5TBK1 243 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 ALKBH2Q6NS38 261 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 STK32CQ86UX6 486 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZFRQ96KR1 1074 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 ZSWIM1Q9BR11 485 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 ELOVL6Q9H5J4 265 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 LRCH1Q9Y2L9 728 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PDS5AQ29RF7 1337 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 ATXN2Q99700 1313 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 CDC40O60508 579 aaKnown RBP eCLIP8.1□□□□□ -1.11
CIITA-201ENST00000324288 CYP2C9P11712 490 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 SLC2A4P14672 509 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 FASTKQ14296 549 aaKnown RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 KIAA1683Q9H0B3 1180 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 POLR1DQ9Y2S0 133 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 PMF1-BGLAPU3KQ54 211 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 AATKQ6ZMQ8 1374 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 A8MUI8 341 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 LRG1P02750 347 aa8.1□□□□□ -1.11
CIITA-201ENST00000324288 HOXA7P31268 230 aaPredicted RBP8.1□□□□□ -1.11
CIITA-201ENST00000324288 CHN2P52757 468 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms