RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CXorf38Q8TB03 319 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 MCUR1Q96AQ8 359 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 NSL1Q96IY1 281 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 PREBQ9HCU5 417 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 PDP2Q9P2J9 529 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 CPA4Q9UI42 421 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 SCN1AP35498 2009 aa16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 LAMA2P24043 3122 aaKnown RBP16.13■□□□□ 0.17
SHROOM1-201ENST00000319854 MCF2LO15068 1137 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 TMEM63AO94886 807 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 HAUS5O94927 633 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 CCDC130P13994 396 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 KRT4P19013 534 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 CCNFP41002 786 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 GPR142Q7Z601 462 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 PPFIBP2Q8ND30 876 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 SLC35B2Q8TB61 432 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 CPT1BQ92523 772 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 LHX5Q9H2C1 402 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 XPO7Q9UIA9 1087 aaKnown RBP16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 TRUB2O95900 331 aaKnown RBP16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 INHBCP55103 352 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 PALM2Q8IXS6 379 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 FBXO36Q8NEA4 188 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 FAM192AQ9GZU8 254 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 KCNK13Q9HB14 408 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 ARMCX1Q9P291 453 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 GPD1P21695 349 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 CA9Q16790 459 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 SPDYAQ5MJ70 313 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 PDCD7Q8N8D1 485 aaKnown RBP16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 DNAJB3Q8WWF6 145 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 STMN2Q93045 179 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 ASB7Q9H672 318 aa16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 PIN4Q9Y237 131 aaKnown RBP16.12■□□□□ 0.17
SHROOM1-201ENST00000319854 HTTP42858 3142 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 A8MXQ7 604 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 ITGAVP06756 1048 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 VDRP11473 427 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 BEX3Q00994 111 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 IZUMO2Q6UXV1 221 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 USP50Q70EL3 339 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 TTC30AQ86WT1 665 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 KLHL23Q8NBE8 558 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 FAM172AQ8WUF8 416 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 KCNN1Q92952 543 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 TRIM56Q9BRZ2 755 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 RNF39Q9H2S5 420 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 PCDH9Q9HC56 1237 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 ASNSD1Q9NWL6 643 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 SLC17A7Q9P2U7 560 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 RNASEH1O60930 286 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 USP1O94782 785 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 MMP3P08254 477 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 LMO2P25791 158 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 GPR162Q16538 588 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 RELL1Q8IUW5 271 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 RIBC1Q8N443 379 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 NPLOC4Q8TAT6 608 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 NCSTNQ92542 709 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 NKD2Q969F2 451 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 CLPTM1LQ96KA5 538 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 DDX43Q9NXZ2 648 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 ZNF212Q9UDV6 495 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 SMG5Q9UPR3 1016 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 NME7Q9Y5B8 376 aa16.11■□□□□ 0.17
SHROOM1-201ENST00000319854 KCNN4O15554 427 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 HMGCRP04035 888 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 GPX6P59796 221 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 MORF4L2Q15014 288 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 BBS12Q6ZW61 710 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 NIPA2Q8N8Q9 360 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 SHKBP1Q8TBC3 707 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 ARHGEF4Q9NR80 690 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 PIH1D1Q9NWS0 290 aaKnown RBP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 GJD2Q9UKL4 321 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 PHF24Q9UPV7 400 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 PPME1Q9Y570 386 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 DOCK3Q8IZD9 2030 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 A6NJR5 290 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 CREB3O43889 395 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 IGFBP6P24592 240 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 YWHAGP61981 247 aaKnown RBP eCLIP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 LIN52Q52LA3 116 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 FYB2Q5VWT5 728 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 CFAP36Q96G28 342 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 MAML3Q96JK9 1138 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 MAF1Q9H063 256 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 RAB6BQ9NRW1 208 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 ETNK2Q9NVF9 386 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 RECQL4O94761 1208 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 ZWINTO95229 277 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 PFKMP08237 780 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 ABHD2P08910 425 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 HOXA11P31270 313 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 SLC18A1P54219 525 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 MYBPC3Q14896 1274 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 DGKDQ16760 1214 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 IGDCC3Q8IVU1 814 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms