RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 COLGALT1Q8NBJ5 622 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ATAD1Q8NBU5 361 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SARS2Q9NP81 518 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PCMTD2Q9NV79 361 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TRPM5Q9NZQ8 1165 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PCDHGC3Q9UN70 934 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 UBA6A0AVT1 1052 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TULP2O00295 520 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SOCS7O14512 581 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 USP12O75317 370 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 IQCF3P0C7M6 154 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 GOT1P17174 413 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FAM187BQ17R55 369 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LRRC8DQ7L1W4 858 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PDCD7Q8N8D1 485 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SCLYQ96I15 445 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 RNF157Q96PX1 679 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FRMD8P1Q9BZ68 369 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ROPN1BQ9BZX4 212 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LRRC19Q9H756 370 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ROPN1Q9HAT0 212 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PCYOX1Q9UHG3 505 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LSM7Q9UK45 103 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LAMB1P07942 1786 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 IGKV6-21A0A0C4DH24 114 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 RIPK2O43353 540 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LRG1P02750 347 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ZNF865P0CJ78 1059 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 MBL2P11226 248 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ELK3P41970 407 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 NDUFV1P49821 464 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TUBP50607 506 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TBX4P57082 545 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 MRPS5P82675 430 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ZNF844Q08AG5 666 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ANKRD20A8PQ5CZ79 823 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FAM182AQ5T1J6 154 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SLAIN1Q8ND83 568 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 DPF3Q92784 378 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 CCT8L2Q96SF2 557 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ZIC5Q96T25 663 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 KCNK16Q96T55 309 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FTHL17Q9BXU8 183 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 MRPL9Q9BYD2 267 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FBXO44Q9H4M3 255 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TMBIM4Q9HC24 238 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 C20orf96Q9NUD7 363 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 OR12D3Q9UGF7 316 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 VANGL2Q9ULK5 521 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TRIM49D1C9J1S8 452 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 EDN1P05305 212 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 CD48P09326 243 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SELPP16109 830 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 PTK6Q13882 451 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SH3PXD2AQ5TCZ1 1133 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 LRRC6Q86X45 466 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SPATS2Q86XZ4 545 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 RASGEF1CQ8N431 466 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 CCNYL1Q8N7R7 359 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 AGR3Q8TD06 166 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 HTR3CQ8WXA8 447 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 PPP2R3CQ969Q6 453 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 ZMAT2Q96NC0 199 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 XPO6Q96QU8 1125 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SDCBP2Q9H190 292 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 XAB2Q9HCS7 855 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 AAASQ9NRG9 546 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SLC8A2Q9UPR5 921 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SH3BP1Q9Y3L3 701 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SBF2Q86WG5 1849 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 MAP2K7O14733 419 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 XPO1O14980 1071 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 EIF3HO15372 352 aaKnown RBP eCLIP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 MTSS1O43312 755 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 POLBP06746 335 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 TGM2P21980 687 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 PBX3P40426 434 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 MATKP42679 507 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 SLC11A2P49281 568 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 RPS6KA2Q15349 733 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 DUPD1Q68J44 220 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 BBS12Q6ZW61 710 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 NUDCD3Q8IVD9 361 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 CLEC4CQ8WTT0 213 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.6□□□□□ -0.871e-6■■■■■ 30.5
TMEM39A-201ENST00000319172 HDAC11Q96DB2 347 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 GPR88Q9GZN0 384 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 CREBZFQ9NS37 354 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 RNF186Q9NXI6 227 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 TLL2Q9Y6L7 1015 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 FAM47DPA6NHR8 397 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 F5H5T6 163 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 RNF103O00237 685 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 PAPSS1O43252 624 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 TCF4P15884 667 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 TPH1P17752 444 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 KRT4P19013 534 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 GPD2P43304 727 aa9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 IFI35P80217 286 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-201ENST00000319172 ENPEPQ07075 957 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms