RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 RRN3Q9NYV6 651 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 MINPP1Q9UNW1 487 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 CCDC154A6NI56 674 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 IL5RAQ01344 420 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 PRKAA1Q13131 559 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 SMAD1Q15797 465 aaKnown RBP15.89■□□□□ 0.13
HCFC1-201ENST00000310441 ADSSL1Q8N142 457 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 ZIM3Q96PE6 472 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 F8VZ95 297 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 OPLAHO14841 1288 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 PHGDHO43175 533 aaKnown RBP15.89■□□□□ 0.13
HCFC1-201ENST00000310441 DDHD2O94830 711 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 RARGP13631 454 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 POU1F1P28069 291 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 SKIV2L2P42285 1042 aaKnown RBP15.89■□□□□ 0.13
HCFC1-201ENST00000310441 C21orf59P57076 290 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 TOP3AQ13472 1001 aaPredicted RBP15.89■□□□□ 0.13
HCFC1-201ENST00000310441 CYB5R4Q7L1T6 521 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 ZNF483Q8TF39 744 aaPredicted RBP15.89■□□□□ 0.13
HCFC1-201ENST00000310441 THAP1Q9NVV9 213 aa15.89■□□□□ 0.13
HCFC1-201ENST00000310441 STAG3L1P0CL83 205 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 INO80DQ53TQ3 878 aaPredicted RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ACAD10Q6JQN1 1059 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 VN1R5Q7Z5H4 357 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ERGIC2Q96RQ1 377 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 VANGL2Q9ULK5 521 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ACOT2P49753 483 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 TTC27Q6P3X3 843 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 LDHDQ86WU2 507 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ATP6V1HQ9UI12 483 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ALG6Q9Y672 507 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 HBP1O60381 514 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 PCNAP12004 261 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 LGALS3BPQ08380 585 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ZDHHC13Q8IUH4 622 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 PJA1Q8NG27 643 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 C8orf4Q9NR00 106 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 KLHL1Q9NR64 748 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 RSL24D1Q9UHA3 163 aaKnown RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 MAGI2Q86UL8 1455 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 UBDO15205 165 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 HNRNPH1P31943 449 aaKnown RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 FXR2P51116 673 aaKnown RBP eCLIP15.88■□□□□ 0.133e-7■■■■□ 23.7
HCFC1-201ENST00000310441 ZNF605Q86T29 641 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ACTRT2Q8TDY3 377 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 PRKD2Q9BZL6 878 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 SNX8Q9Y5X2 465 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ERBB3P21860 1342 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 CDK7P50613 346 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 MCL1Q07820 350 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 METTL16Q86W50 562 aaKnown RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.88■□□□□ 0.132e-7■■■■■ 33.4
HCFC1-201ENST00000310441 RAD51BO15315 384 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 STRA8Q7Z7C7 330 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 MIER2Q8N344 545 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 NEDD1Q8NHV4 660 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 UTP15Q8TED0 518 aaKnown RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ANKRD7Q92527 254 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ZSWIM1Q9BR11 485 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 PRDM16Q9HAZ2 1276 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 IRAK3Q9Y616 596 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 CCDC162PA2VCL2 907 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 EPHB2P29323 1055 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 CUL2Q13617 745 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 STRIP1Q5VSL9 837 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 SHC4Q6S5L8 630 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 C1orf131Q8NDD1 294 aaKnown RBP15.88■□□□□ 0.13
HCFC1-201ENST00000310441 ACTRT1Q8TDG2 376 aa15.88■□□□□ 0.13
HCFC1-201ENST00000310441 PUDPQ08623 228 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 GRIK3Q13003 919 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PRR5LQ6MZQ0 368 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 C11orf74Q86VG3 221 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 S100ZQ8WXG8 99 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 UBP1Q9NZI7 540 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PNMA8BQ9ULN7 279 aaPredicted RBP15.87■□□□□ 0.13
HCFC1-201ENST00000310441 A0A0A6YYK5 440 aaPredicted RBP15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PMPCBO75439 489 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PDGFRBP09619 1106 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 GZMAP12544 262 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 CRYL1Q9Y2S2 319 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 LOC100653049A0A140TA62 436 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 SCARA3Q6AZY7 606 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 RIT2Q99578 217 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PRKAG3Q9UGI9 489 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 RGS7P49802 495 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 ZNF135P52742 658 aaPredicted RBP15.87■□□□□ 0.13
HCFC1-201ENST00000310441 FRG1Q14331 258 aaKnown RBP15.87■□□□□ 0.13
HCFC1-201ENST00000310441 VPS72Q15906 364 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 B3GALNT2Q8NCR0 500 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 SKA1Q96BD8 255 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 SAE1Q9UBE0 346 aaPredicted RBP15.87■□□□□ 0.13
HCFC1-201ENST00000310441 KIAA1210Q9ULL0 1709 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 GSAPA4D1B5 854 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PSMB9P28065 219 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 PLCL1Q15111 1095 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 MGAT5BQ3V5L5 792 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 BHLHB9Q6PI77 547 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 OR52L1Q8NGH7 329 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 MYCBPAPQ8TBZ2 947 aa15.87■□□□□ 0.13
HCFC1-201ENST00000310441 NSMCE2Q96MF7 247 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms