RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 KCNK1O00180 336 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 EML1O00423 815 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 B4GALT5O43286 388 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 SOAT2O75908 522 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 RAD23BP54727 409 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 GALNT3Q14435 633 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 TRIM65Q6PJ69 517 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 SERPINA13PQ6UXR4 307 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 NLRP9Q7RTR0 991 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF555Q8NEP9 628 aa8.03□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3DA0A087WVF3 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3IA0A087WXS9 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3EA0A087X179 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3KA0A087X1G2 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3FA6NER0 549 aaPredicted RBP8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3LB9A6J9 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 RHOBTB3O94955 611 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3HP0C7X1 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 RRM1P23921 792 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 GABRR2P28476 465 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 CSNK2BP67870 215 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 ABRQ12979 859 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3GQ6DHY5 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3CQ6IPX1 549 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 TBC1D3Q8IZP1 549 aaPredicted RBP8.02□□□□□ -1.12
SCN9A-201ENST00000303354 PMM1Q92871 262 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 CNBD2Q96M20 576 aa8.02□□□□□ -1.12
SCN9A-201ENST00000303354 NR5A2O00482 541 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 GLP2RO95838 553 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SLC8A1P32418 973 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PBX3P40426 434 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SEMG2Q02383 582 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PTK6Q13882 451 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 E4F1Q66K89 784 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 COLGALT2Q8IYK4 626 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 ATP6V1C2Q8NEY4 427 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 USP13Q92995 863 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 STAMBPL1Q96FJ0 436 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SENP8Q96LD8 212 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 ATP6V1HQ9UI12 483 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 FAM50BQ9Y247 325 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 GMNCA6NCL1 334 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 XPO1O14980 1071 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 YBX3P16989 372 aaKnown RBP eCLIP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 HSPA9P38646 679 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 TTC7BQ86TV6 843 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 NLRP14Q86W24 1093 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 BRD9Q9H8M2 597 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 MIEF1Q9NQG6 463 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 DISP2A7MBM2 1401 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 MAT2AP31153 395 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 BCAT1P54687 386 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 C15orf59Q2T9L4 293 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 UGT3A1Q6NUS8 523 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 MMGT1Q8N4V1 131 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 BCL2L14Q9BZR8 327 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SEMA6BQ9H3T3 888 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 OSER1Q9NX31 292 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 GAKO14976 1311 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 NEXMIFQ5QGS0 1516 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 EFCAB14O75071 495 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 CAV1Q03135 178 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 CRTC3Q6UUV7 619 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 BTN2A1Q7KYR7 527 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SPATA6LQ8N4H0 392 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 POMGNT2Q8NAT1 580 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 APBA2Q99767 749 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 HTATIP2Q9BUP3 242 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 KANSL3Q9P2N6 904 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PLA2R1Q13018 1463 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 RIMS1Q86UR5 1692 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 CEP152O94986 1710 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 WDR27A2RRH5 827 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 ANXA9O76027 345 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 HLA-DQA2P01906 255 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 FGBP02675 491 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 ALAS2P22557 587 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 MGAT1P26572 445 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 TRIM28Q13263 835 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 RAD9BQ6WBX8 426 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 AUTS2Q8WXX7 1259 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 MRPL1Q9BYD6 325 aaKnown RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 CCSER1Q9C0I3 900 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PCCBP05166 539 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PEX5P50542 639 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 FXR2P51116 673 aaKnown RBP eCLIP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 UXS1Q8NBZ7 420 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 ARHGEF5Q12774 1597 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PTPRMP28827 1452 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 RAMP2O60895 175 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 AP2B1P63010 937 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 CYP24A1Q07973 514 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 TTLL9Q3SXZ7 439 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 SLC27A1Q6PCB7 646 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 JSRP1Q96MG2 331 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-201ENST00000303354 GPAMQ9HCL2 828 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 PPP2R3BQ9Y5P8 575 aa8.02□□□□□ -1.13
SCN9A-201ENST00000303354 FAM187AA6NFU0 413 aa8.01□□□□□ -1.13
SCN9A-201ENST00000303354 TRIM49D1C9J1S8 452 aa8.01□□□□□ -1.13
SCN9A-201ENST00000303354 KRT33AO76009 404 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms