RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PPP3CAQ08209 521 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 KBTBD12Q3ZCT8 623 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 FOXR2Q6PJQ5 311 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TMEM161BQ8NDZ6 487 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TMC2Q8TDI7 906 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 MAML3Q96JK9 1138 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TMEM165Q9HC07 324 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 PRMT7Q9NVM4 692 aaPredicted RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 ACTL7BQ9Y614 415 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 WNK3Q9BYP7 1800 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 ARHGDIAP52565 204 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 SGSM1Q2NKQ1 1148 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 B3GNT6Q6ZMB0 384 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 PLEKHH3Q7Z736 793 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 CLNKQ7Z7G1 428 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 PCYOX1LQ8NBM8 494 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 ZBTB45Q96K62 511 aaPredicted RBP15.83■□□□□ 0.13
SHH-201ENST00000297261 SIK2Q9H0K1 926 aa15.83■□□□□ 0.13
SHH-201ENST00000297261 WRAP73Q9P2S5 460 aaPredicted RBP15.83■□□□□ 0.13
SHH-201ENST00000297261 C2CD2LO14523 706 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 PTK2BQ14289 1009 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 C6orf10Q5SRN2 563 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 PIGWQ7Z7B1 504 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 TRABD2AQ86V40 505 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 OR6Y1Q8NGX8 325 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 COPS7BQ9H9Q2 264 aaPredicted RBP15.83■□□□□ 0.12
SHH-201ENST00000297261 GPATCH2LQ9NWQ4 482 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 SRP72O76094 671 aaKnown RBP15.83■□□□□ 0.12
SHH-201ENST00000297261 LAMTOR4Q0VGL1 99 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 CAPRIN1Q14444 709 aaKnown RBP15.83■□□□□ 0.12
SHH-201ENST00000297261 DGKDQ16760 1214 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 KHDC1Q4VXA5 237 aaKnown RBP15.83■□□□□ 0.12
SHH-201ENST00000297261 CCDC117Q8IWD4 279 aaPredicted RBP15.83■□□□□ 0.12
SHH-201ENST00000297261 LRRC19Q9H756 370 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 FAM49BQ9NUQ9 324 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 COMMD3-BMI1R4GMX3 469 aa15.83■□□□□ 0.12
SHH-201ENST00000297261 NFASCO94856 1347 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 OGTO15294 1046 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ZMPSTE24O75844 475 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 MT-CO1P00395 513 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ZNF286BP0CG31 522 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 MAPK10P53779 464 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ZBTB46Q86UZ6 589 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 RASGEF1CQ8N431 466 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ECSITQ9BQ95 431 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 LYPLA2O95372 231 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C6orf222P0C671 652 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 SERPINB10P48595 397 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 TSTA3Q13630 321 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 PDK3Q15120 406 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C16orf46Q6P387 395 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 CDRT15Q96T59 188 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 NIF3L1Q9GZT8 377 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 SLX4Q8IY92 1834 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 SPDYE5A6NIY4 337 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 GSC2O15499 205 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 CPA3P15088 417 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 SERPINB1P30740 379 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 PKNOX1P55347 436 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 NRF1Q16656 503 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 EFHC2Q5JST6 749 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 N4BP2L1Q5TBK1 243 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 DENND5BQ6ZUT9 1274 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 KYQ8NBH2 561 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C12orf42Q96LP6 360 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ZBTB18Q99592 522 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 MTMR12Q9C0I1 747 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C5orf60A6NFR6 353 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C16orf96A6NNT2 1141 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 VTNP04004 478 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 PPM1FP49593 454 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 BST1Q10588 318 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 LRRC57Q8N9N7 239 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 ZSCAN18Q8TBC5 510 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 ASAP3Q8TDY4 903 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 FRMD8Q9BZ67 464 aaPredicted RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 PIH1D1Q9NWS0 290 aaKnown RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 STAP1Q9ULZ2 295 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 PIN4Q9Y237 131 aaKnown RBP15.82■□□□□ 0.12
SHH-201ENST00000297261 PPME1Q9Y570 386 aa15.82■□□□□ 0.12
SHH-201ENST00000297261 C1orf232A0A0U1RR37 186 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 PAEPP09466 180 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 INSRRP14616 1297 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 NCKAP1LP55160 1127 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 STX5Q13190 355 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 TSHZ1Q6ZSZ6 1077 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 TMCO5AQ8N6Q1 288 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 ZC3H15Q8WU90 426 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 C12orf65Q9H3J6 166 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 THAP1Q9NVV9 213 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 A0A1B0GUL6 1792 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 ALBP02768 609 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 ADRB2P07550 413 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 GFAPP14136 432 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 KCNA2P16389 499 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 RPS6KA3P51812 740 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 CHN2P52757 468 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 NUP107P57740 925 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 SLC5A9Q2M3M2 681 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms