RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 USP6NLQ92738 828 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 PLEKHG4BQ96PX9 1271 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 TMEM134Q9H6X4 195 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 PLAC1Q9HBJ0 212 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MTO1Q9Y2Z2 717 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 TTLL3Q9Y4R7 772 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MYO18AQ92614 2054 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 A0A1B0GVG6 124 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 LACTBL1A8MY62 500 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MAFO75444 373 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 SORBS2O94875 1100 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 ZCCHC18P0CG32 403 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CDH5P33151 784 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 HUNKP57058 714 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CCNA1P78396 465 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ENPEPQ07075 957 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 TARBP2Q15633 366 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 ATF7IP2Q5U623 682 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 NUDCD3Q8IVD9 361 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 NDUFAF2Q8N183 169 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CFAP61Q8NHU2 1237 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ALKBH8Q96BT7 664 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 CCDC97Q96F63 343 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 CPB2Q96IY4 423 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 NIFKQ9BYG3 293 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 CEP41Q9BYV8 373 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 TXNRD2Q9NNW7 524 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 SSU72Q9NP77 194 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 I3L4J1 428 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 GPR25O00155 361 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ABLIM1O14639 778 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 PRPSAP2O60256 369 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 LGR5O75473 907 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ZBED1O96006 694 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CYP3A5P20815 502 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 TPP2P29144 1249 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 SLC18A2Q05940 514 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 NOMO1Q15155 1222 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 JADE1Q6IE81 842 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ZPBP2Q6X784 338 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 FAM183BPQ6ZVS7 135 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CAND1Q86VP6 1230 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 SLC26A11Q86WA9 606 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ZBTB8OSQ8IWT0 167 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 HIPK4Q8NE63 616 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 E2F7Q96AV8 911 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MPHOSPH6Q99547 160 aaKnown RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 APOL6Q9BWW8 343 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 B3GNT5Q9BYG0 378 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MIS12Q9H081 205 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 USP29Q9HBJ7 922 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 FAM49BQ9NUQ9 324 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CNTN3Q9P232 1028 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MORF4L1Q9UBU8 362 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 MFHAS1Q9Y4C4 1052 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 PRR5-ARHGAP8B1AHC4 643 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RARBP10826 455 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 SP100P23497 879 aaPredicted RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 ARHGAP8P85298 464 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 SLC34A1Q06495 639 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 PEX6Q13608 980 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 TTC39BQ5VTQ0 682 aaPredicted RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 PPP1R2P3Q6NXS1 205 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 CYP4V2Q6ZWL3 525 aaPredicted RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 ARHGAP22Q7Z5H3 698 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 SCUBE3Q8IX30 993 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 PLD5Q8N7P1 536 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 GPRC5AQ8NFJ5 357 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 FAM81AQ8TBF8 368 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RSAD1Q9HA92 442 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 DNAH12Q6ZR08 3092 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RFPL1O75677 317 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 METTL18O95568 372 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 SNRPAP09012 282 aaKnown RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 ADORA2AP29274 412 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 GPD2P43304 727 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 BCAR1P56945 870 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 Q3C1V9 767 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 CASC4Q6P4E1 433 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RSPH3Q86UC2 560 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RBM12BQ8IXT5 1001 aaKnown RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 ZNF398Q8TD17 642 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 TMEM176AQ96HP8 235 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 PARK7Q99497 189 aaKnown RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 TSC22D3Q99576 134 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 CDT1Q9H211 546 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 RPF1Q9H9Y2 349 aaKnown RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 PPCSQ9HAB8 311 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 POPDC2Q9HBU9 364 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 KRT82Q9NSB4 513 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 ASNSD1Q9NWL6 643 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 MAGED2Q9UNF1 606 aaPredicted RBP10.41□□□□□ -0.74
LIG3-201ENST00000262327 PLLPQ9Y342 182 aa10.41□□□□□ -0.74
LIG3-201ENST00000262327 SOWAHBA6NEL2 793 aa10.4□□□□□ -0.74
LIG3-201ENST00000262327 MANSC4A6NHS7 340 aaPredicted RBP10.4□□□□□ -0.74
LIG3-201ENST00000262327 MED7O43513 233 aa10.4□□□□□ -0.74
LIG3-201ENST00000262327 HCRTO43612 131 aa10.4□□□□□ -0.74
LIG3-201ENST00000262327 ITM2AO43736 263 aa10.4□□□□□ -0.74
LIG3-201ENST00000262327 ACADSP16219 412 aa10.4□□□□□ -0.74
LIG3-201ENST00000262327 GPD1P21695 349 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms