RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 WDR35Q9P2L0 1181 aa12.38□□□□□ -0.43
USHBP1-201ENST00000252597 DNAJC6O75061 913 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 METTL18O95568 372 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SDC4P31431 198 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 TCF7P36402 384 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 NUDT2P50583 147 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 TMED1Q13445 227 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 TFDP2Q14188 446 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SFT2D3Q587I9 215 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 PAOXQ6QHF9 649 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SNX31Q8N9S9 440 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 FAM156AQ8NDB6 213 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 ZSCAN18Q8TBC5 510 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 TMA16Q96EY4 203 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 RSAD1Q9HA92 442 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 LNPEPQ9UIQ6 1025 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SOX13Q9UN79 622 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 PLLPQ9Y342 182 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 MFHAS1Q9Y4C4 1052 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 KCNK1O00180 336 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 TPP1O14773 563 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 LYPLA2O95372 231 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 PGK2P07205 417 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 GPD1P21695 349 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SLC1A6P48664 564 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SLC25A11Q02978 314 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 STXBP2Q15833 593 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 OR52E8Q6IFG1 317 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 C15orf39Q6ZRI6 1047 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 FAM131BQ86XD5 332 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 C10orf107Q8IVU9 208 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 RTKN2Q8IZC4 609 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 LGMNQ99538 433 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 NTPCRQ9BSD7 190 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 PORCNQ9H237 461 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 WDR55Q9H6Y2 383 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 CAB39LQ9H9S4 337 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 BTBD7Q9P203 1132 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 ZNF212Q9UDV6 495 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 MED7O43513 233 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 HNRNPCL1O60812 293 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 NPTXRO95502 500 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 AVPR1AP37288 418 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 MRPS22P82650 360 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 PTPN11Q06124 597 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SPDYE2Q495Y8 402 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 CES4AQ5XG92 561 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 HEATR6Q6AI08 1181 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 LAYNQ6UX15 382 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 FAM43BQ6ZT52 329 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 GALNT15Q8N3T1 639 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SPATA6LQ8N4H0 392 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 OR6B3Q8NGW1 331 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 GSDMBQ8TAX9 411 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 CNKSR2Q8WXI2 1034 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 OXCT2Q9BYC2 517 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 C17orf75Q9HAS0 396 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 CYLDQ9NQC7 956 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 AKT3Q9Y243 479 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 HBS1LQ9Y450 684 aaKnown RBP12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SNX9Q9Y5X1 595 aa12.37□□□□□ -0.43
USHBP1-201ENST00000252597 SIGLEC16A6NMB1 481 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 LIN7AO14910 233 aaPredicted RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 HCRTO43612 131 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TRUB2O95900 331 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TFE3P19532 575 aaPredicted RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MGAT1P26572 445 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 NAMPTP43490 491 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 FKBP1AP62942 108 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 CNPY1Q3B7I2 92 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 DNAL1Q4LDG9 190 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 GJC2Q5T442 439 aaPredicted RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 CCNYL1Q8N7R7 359 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 ICA1LQ8NDH6 482 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 OR6Y1Q8NGX8 325 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 GRIP2Q9C0E4 1043 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 ETNK2Q9NVF9 386 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TM7SF2O76062 418 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 APOEP02649 317 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 AMHP03971 560 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 FGFR3P22607 806 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MRPS5P82675 430 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TBL3Q12788 808 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 NME3Q13232 169 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 DLG2Q15700 870 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TRMT5Q32P41 509 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 SPDYAQ5MJ70 313 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 PHTF2Q8N3S3 785 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MPP4Q96JB8 637 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MRIQ9BWK5 157 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 VCX3BQ9H321 246 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 OCEL1Q9H607 264 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 PAK5Q9P286 719 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 FOCADQ5VW36 1801 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MYH9P35579 1960 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 XPO1O14980 1071 aaKnown RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 ITGBL1O95965 494 aaPredicted RBP12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TPH1P17752 444 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 CCR10P46092 362 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms