RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 MSANTD2Q6P1R3 559 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 REXO1L1PQ8IX06 675 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 EMC1Q8N766 993 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 SMRP1Q8NCR6 262 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 PPM1EQ8WY54 764 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 EDEM1Q92611 657 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 CENPIQ92674 756 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 HLA-CQ95604 372 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 PGAP3Q96FM1 320 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 NECTIN4Q96NY8 510 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 MCEEQ96PE7 176 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 NPY6RQ99463 290 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 UBE2ZQ9H832 354 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 OSGEPQ9NPF4 335 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 KCND1Q9NSA2 647 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 IP6K2Q9UHH9 426 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 COG5Q9UP83 839 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 DUSP10Q9Y6W6 482 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 TRANK1O15050 2925 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 A0A0U1RQJ8 604 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 TLR5O60602 858 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 ENDOD1O94919 500 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 OLFM2O95897 454 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 F9P00740 461 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 GJA1P17302 382 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 DESP17661 470 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 HDCP19113 662 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 WEE1P30291 646 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 SDC4P31431 198 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 CYP4F8P98187 520 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 PIGHQ14442 188 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-213ENST00000642137 TEAD2Q15562 447 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 IFI16Q16666 785 aaKnown RBP12.86□□□□□ -0.35
LINC00339-213ENST00000642137 CCDC14Q49A88 953 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 C10orf120Q5SQS8 335 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 TRNP1Q6NT89 227 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 RSRC2Q7L4I2 434 aaKnown RBP12.86□□□□□ -0.35
LINC00339-213ENST00000642137 BNIPLQ7Z465 357 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 MAB21L3Q8N8X9 362 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 KIAA1524Q8TCG1 905 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 ATRIPQ8WXE1 791 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 SUSD6Q92537 303 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 NCAPGQ9BPX3 1015 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 CNPY3Q9BT09 278 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 SLC46A2Q9BY10 475 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 RNF38Q9H0F5 515 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 CCSER2Q9H7U1 834 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 SALL4Q9UJQ4 1053 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 DNMT3LQ9UJW3 386 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 ANAPC7Q9UJX3 599 aa12.86□□□□□ -0.35
LINC00339-213ENST00000642137 TRAV19A0A0A6YYK7 116 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 C2orf78A6NCI8 922 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 GOLGA6L9A6NEM1 432 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 COCHO43405 550 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 TRUB2O95900 331 aaKnown RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 TBX18O95935 607 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 PSMA2P25787 234 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 KPNA1P52294 538 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 NAP1L1P55209 391 aaKnown RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 SLC7A9P82251 487 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 COG7P83436 770 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 OGDHQ02218 1023 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 NNTQ13423 1086 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 EIF4EBP2Q13542 120 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 ARHGAP29Q52LW3 1261 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 GPR158Q5T848 1215 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 STRADAQ7RTN6 431 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 CCAR2Q8N163 923 aaKnown RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 NIPA2Q8N8Q9 360 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 ARL14EPQ8N8R7 260 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 TPCN2Q8NHX9 752 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 ITFG1Q8TB96 612 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 DQX1Q8TE96 717 aaKnown RBP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 CFAP57Q96MR6 1250 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 CYP2S1Q96SQ9 504 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 TRIM7Q9C029 511 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 SMOC2Q9H3U7 446 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00339-213ENST00000642137 GDE1Q9NZC3 331 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 MARCH2Q9P0N8 246 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 SFMBT1Q9UHJ3 866 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 NUDT5Q9UKK9 219 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 GUCA1BQ9UMX6 200 aa12.85□□□□□ -0.35
LINC00339-213ENST00000642137 H3BQ06 376 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-213ENST00000642137 M0QYT0 321 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 NRG2O14511 850 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-213ENST00000642137 MBTPS2O43462 519 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 BUB1O43683 1085 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 RNF8O76064 485 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 PROSCO94903 275 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 IGLV3-25P01717 112 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 MBL2P11226 248 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-213ENST00000642137 CEBPBP17676 345 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 KCNA5P22460 613 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 DEKP35659 375 aaKnown RBP12.84□□□□□ -0.35
LINC00339-213ENST00000642137 SULT1E1P49888 294 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 DEUP1Q05D60 604 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 EFEMP1Q12805 493 aa12.84□□□□□ -0.35
LINC00339-213ENST00000642137 SMAD4Q13485 552 aaKnown RBP12.84□□□□□ -0.35
LINC00339-213ENST00000642137 MESDQ14696 234 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms