RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ADSSP30520 456 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ACTN2P35609 894 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 DGKGP49619 791 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ZNF131P52739 623 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ST3GAL1Q11201 340 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 DHX8Q14562 1220 aaKnown RBP15.43■□□□□ 0.06
CLN3-249ENST00000636685 MAPRE1Q15691 268 aaKnown RBP15.43■□□□□ 0.06
CLN3-249ENST00000636685 INAVAQ3KP66 663 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 MDH1BQ5I0G3 518 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ARHGAP40Q5TG30 622 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 GPBP1Q86WP2 473 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 GATAD2AQ86YP4 633 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 MYCBPAPQ8TBZ2 947 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 POMGNT1Q8WZA1 660 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 PRCCQ92733 491 aaPredicted RBP15.43■□□□□ 0.06
CLN3-249ENST00000636685 DUSP9Q99956 384 aaKnown RBP15.43■□□□□ 0.06
CLN3-249ENST00000636685 ZHX3Q9H4I2 956 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ITGA11Q9UKX5 1188 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 ARID1BQ8NFD5 2236 aaPredicted RBP15.42■□□□□ 0.06
CLN3-249ENST00000636685 CTSKP43235 329 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 GRIA4P48058 902 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 RBP5P82980 135 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 GNL2Q13823 731 aaKnown RBP15.42■□□□□ 0.06
CLN3-249ENST00000636685 TBC1D25Q3MII6 688 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 TMEM119Q4V9L6 283 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 PKDCCQ504Y2 493 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 FBXL19Q6PCT2 694 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 HS2ST1Q7LGA3 356 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 LIMS2Q7Z4I7 341 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 CACTINQ8WUQ7 758 aaKnown RBP15.42■□□□□ 0.06
CLN3-249ENST00000636685 BHMTQ93088 406 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 FBXO32Q969P5 355 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 CDK5RAP3Q96JB5 506 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 CNDP2Q96KP4 475 aaKnown RBP15.42■□□□□ 0.06
CLN3-249ENST00000636685 LGMNQ99538 433 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 FAM213AQ9BRX8 229 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 WDR35Q9P2L0 1181 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 DACH1Q9UI36 760 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 PLXNA2O75051 1894 aa15.42■□□□□ 0.06
CLN3-249ENST00000636685 TEX15Q9BXT5 2789 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 PAPSS1O43252 624 aaPredicted RBP15.41■□□□□ 0.06
CLN3-249ENST00000636685 GREM1O60565 184 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 LDOC1O95751 146 aaPredicted RBP15.41■□□□□ 0.06
CLN3-249ENST00000636685 C1SP09871 688 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 ACADMP11310 421 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 PRPHP41219 470 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 ACADVLP49748 655 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 COPAP53621 1224 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 PRAMEF14Q5SWL7 426 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 BRSK2Q8IWQ3 736 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 NUP93Q8N1F7 819 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 PDZD8Q8NEN9 1154 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 TTC9Q92623 222 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 SAAL1Q96ER3 474 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 PLK2Q9NYY3 685 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 MARK1Q9P0L2 795 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.41■□□□□ 0.06
CLN3-249ENST00000636685 NME7Q9Y5B8 376 aa15.41■□□□□ 0.06
CLN3-249ENST00000636685 CLDN5O00501 218 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 SYNCRIPO60506 623 aaKnown RBP15.4■□□□□ 0.06
CLN3-249ENST00000636685 CDK4P11802 303 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 WARSP23381 471 aaKnown RBP15.4■□□□□ 0.06
CLN3-249ENST00000636685 ACSL1P33121 698 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 CSRP3P50461 194 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 TMPRSS3P57727 454 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 HTR3DQ70Z44 454 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 CENPQQ7L2Z9 268 aaPredicted RBP15.4■□□□□ 0.06
CLN3-249ENST00000636685 DPH6Q7L8W6 267 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 SCAMP5Q8TAC9 235 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 P2RY11Q96G91 374 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 ZNF518BQ9C0D4 1074 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 MTMR12Q9C0I1 747 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 NACA2Q9H009 215 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 PCED1AQ9H1Q7 454 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 OSGEPQ9NPF4 335 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 THAP10Q9P2Z0 257 aaPredicted RBP15.4■□□□□ 0.06
CLN3-249ENST00000636685 PTPRJQ12913 1337 aa15.4■□□□□ 0.06
CLN3-249ENST00000636685 A0A1B0GTQ1 180 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 LAD1O00515 517 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 PGFP49763 221 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 ORC1Q13415 861 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 ENPP2Q13822 863 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 COLEC12Q5KU26 742 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 PRICKLE2Q7Z3G6 844 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 KCTD17Q8N5Z5 321 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 FBXO18Q8NFZ0 1043 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 OVCA2Q8WZ82 227 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 BIRC7Q96CA5 298 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 HPDLQ96IR7 371 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 MRPL45Q9BRJ2 306 aaKnown RBP15.39■□□□□ 0.05
CLN3-249ENST00000636685 TRIM4Q9C037 500 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 PDE11AQ9HCR9 933 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 RBAKQ9NYW8 714 aaPredicted RBP15.39■□□□□ 0.05
CLN3-249ENST00000636685 AHCTF1Q8WYP5 2266 aa15.39■□□□□ 0.05
CLN3-249ENST00000636685 UBR5O95071 2799 aaPredicted RBP15.38■□□□□ 0.05
CLN3-249ENST00000636685 GOLGA8IPA6NC78 632 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 GOLGA8JA6NMD2 632 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 RTN3O95197 1032 aaPredicted RBP15.38■□□□□ 0.05
CLN3-249ENST00000636685 KRT18P05783 430 aaKnown RBP15.38■□□□□ 0.05
CLN3-249ENST00000636685 ACO1P21399 889 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms