RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TRIP12Q14669 1992 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-213ENST00000620219 BNIP3LO60238 219 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 NRLP54845 237 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 PRMT2P55345 433 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 CCDC14Q49A88 953 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 DUPD1Q68J44 220 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 ZDHHC17Q8IUH5 632 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 PYROXD2Q8N2H3 581 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 TMEM209Q96SK2 561 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 SFMBT1Q9UHJ3 866 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 YJEFN3A6XGL0 299 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 E7ENQ6 273 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 KCNK1O00180 336 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 BEST1O76090 585 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 KIAA0754O94854 1291 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 FBXO21O94952 628 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 GOT1P17174 413 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 TAOK1Q7L7X3 1001 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 CDKL3Q8IVW4 592 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-213ENST00000620219 TKTL2Q9H0I9 626 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 NOS2P35228 1153 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 C3orf58Q8NDZ4 430 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 MDM1Q8TC05 714 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 RUBCNQ92622 972 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-213ENST00000620219 OTOFQ9HC10 1997 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 C2CD4BA6NLJ0 364 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 DUSP4Q13115 394 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 PDK2Q15119 407 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 PPP1R14CQ8TAE6 165 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 PPP1R10Q96QC0 940 aaKnown RBP16.32■□□□□ 0.2
CPSF1-213ENST00000620219 HNRNPABQ99729 332 aaKnown RBP16.32■□□□□ 0.2
CPSF1-213ENST00000620219 ZFXP17010 805 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-213ENST00000620219 CLEC20AQ6ZU45 233 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 SRRM1Q8IYB3 904 aaKnown RBP16.32■□□□□ 0.2
CPSF1-213ENST00000620219 GRIN2DO15399 1336 aa16.32■□□□□ 0.2
CPSF1-213ENST00000620219 CAND2O75155 1236 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 HSPA9P38646 679 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 COPS2P61201 443 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 VEPH1Q14D04 833 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 LRRC14Q15048 493 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 HFE2Q6ZVN8 426 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 KBTBD7Q8WVZ9 684 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CD101Q93033 1021 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CRTAC1Q9NQ79 661 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 TMPRSS4Q9NRS4 437 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 MSI1O43347 362 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 INHBAP08476 426 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SPATA31D3P0C874 917 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 RBL1P28749 1068 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 ATP5DP30049 168 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 OR1D2P34982 312 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CHKAP35790 457 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 MATKP42679 507 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 ADAM17P78536 824 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CA9Q16790 459 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SYPL2Q5VXT5 272 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SPATA31D4Q6ZUB0 917 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 TMC7Q7Z402 723 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CRYBG2Q8N1P7 616 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 KLHDC9Q8NEP7 349 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 DEPDC1BQ8WUY9 529 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SLC35F5Q8WV83 523 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 UBE2Q2Q8WVN8 375 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 PABPC5Q96DU9 382 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 VRTNQ9H8Y1 702 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CDY1Q9Y6F8 540 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 H0YHG0 523 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 TFE3P19532 575 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 WARSP23381 471 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SEC24CP53992 1094 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 INTS6LQ5JSJ4 861 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 PRSS55Q6UWB4 352 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 TFAP2DQ7Z6R9 452 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 MCRS1Q96EZ8 462 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SMPD4Q9NXE4 827 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 GDAP2Q9NXN4 497 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 ADAM28Q9UKQ2 775 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CNTN6Q9UQ52 1028 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SF3B1O75533 1304 aaKnown RBP eCLIP16.31■□□□□ 0.27e-7■■■■■ 81.3
CPSF1-213ENST00000620219 NRP1O14786 923 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 MDM4O15151 490 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 ZNF844Q08AG5 666 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CDC42EP4Q9H3Q1 356 aaKnown RBP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.31■□□□□ 0.2
CPSF1-213ENST00000620219 HCSTQ9UBK5 93 aa16.31■□□□□ 0.2
CPSF1-213ENST00000620219 CITO14578 2027 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 SLC12A8A0AV02 714 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 MAGEA4P43358 317 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 ALDH1A3P47895 512 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 CAV1Q03135 178 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 VARS2Q5ST30 1063 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 LRRC38Q5VT99 294 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 DENND5BQ6ZUT9 1274 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 CCDC185Q8N715 623 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 UROC1Q96N76 676 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 NR2E3Q9Y5X4 410 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 LIASO43766 372 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 HNRNPH2P55795 449 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 KCNT2Q6UVM3 1135 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms