RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 TMEM121BQ9BXQ6 578 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-227ENST00000602011 DNAJC17Q9NVM6 304 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-227ENST00000602011 CLIC5Q9NZA1 410 aa18.79■□□□□ 0.6
SHKBP1-227ENST00000602011 MBD1Q9UIS9 605 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-227ENST00000602011 ASCC3Q8N3C0 2202 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-227ENST00000602011 BAHCC1Q9P281 2608 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 ATRXP46100 2492 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 GREM1O60565 184 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 BEST1O76090 585 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 HLA-DRAP01903 254 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 SERPINF2P08697 491 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 RALAP11233 206 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 KRT13P13646 458 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 CCDC130P13994 396 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 TYRP14679 529 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 GTF2H1P32780 548 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 CHKAP35790 457 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 PIK3CAP42336 1068 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 PTGER3P43115 390 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 ASPAP45381 313 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 DLG4P78352 724 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 COG7P83436 770 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 CHPFQ8IZ52 775 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 HDDC3Q8N4P3 179 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 C12orf29Q8N999 325 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 GABRG3Q99928 467 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 UBXN6Q9BZV1 441 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 DCLK3Q9C098 648 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 FSCN3Q9NQT6 498 aa18.78■□□□□ 0.6
SHKBP1-227ENST00000602011 ATXN2Q99700 1313 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 MYOFQ9NZM1 2061 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 CACNA1EQ15878 2313 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 A0A1W2PQD8 194 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 H0Y626 953 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 TRIM16O95361 564 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 SYPP08247 313 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 RARGP13631 454 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ENGP17813 658 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 GABRG2P18507 467 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ACO1P21399 889 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 MAPK8P45983 427 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 KIF11P52732 1056 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 MCCD1P59942 119 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 RPL6Q02878 288 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ZNF33AQ06730 810 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 FOXD4L5Q5VV16 416 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 CLEC20AQ6ZU45 233 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 METTL3Q86U44 580 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ARHGAP18Q8N392 663 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 KDF1Q8NAX2 398 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 IPO4Q8TEX9 1081 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 FOXD4L4Q8WXT5 416 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 FOXJ1Q92949 421 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 CCDC34Q96HJ3 373 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 SCNM1Q9BWG6 230 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 ADAM33Q9BZ11 813 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 TMEM74BQ9NUR3 256 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 SUSD2Q9UGT4 822 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 FBXO10Q9UK96 956 aa18.77■□□□□ 0.6
SHKBP1-227ENST00000602011 MYO18AQ92614 2054 aaKnown RBP18.77■□□□□ 0.59
SHKBP1-227ENST00000602011 A0A1W2PQF6 199 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 NEDD8-MDP1E9PL57 170 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 TBX18O95935 607 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 IRF1P10914 325 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 PSMC2P35998 433 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 DGKGP49619 791 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 DNM1Q05193 864 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 COL9A2Q14055 689 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 FOXD4L6Q3SYB3 417 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 SYCP2LQ5T4T6 812 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 FOXD4L3Q6VB84 417 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 CCDC186Q7Z3E2 898 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 GRAMD1CQ8IYS0 662 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 DUSP16Q9BY84 665 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 NIF3L1Q9GZT8 377 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 FAM49BQ9NUQ9 324 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 SLC27A6Q9Y2P4 619 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 USP3Q9Y6I4 520 aa18.76■□□□□ 0.59
SHKBP1-227ENST00000602011 HHLA1C9JL84 531 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 STX10O60499 249 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 RHOBTB3O94955 611 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 ITPKAP23677 461 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 NR2F2P24468 414 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 ADORA2BP29275 332 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 SLC8A3P57103 927 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 SEMA3BQ13214 749 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 SLC14A1Q13336 389 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 C10orf120Q5SQS8 335 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 GUF1Q8N442 669 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 DEFB119Q8N690 84 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 UCMAQ8WVF2 138 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 GATA6Q92908 595 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 ZNF419Q96HQ0 510 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 CAPN10Q9HC96 672 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 CALCOCO1Q9P1Z2 691 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 HPSEQ9Y251 543 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 NFE2L3Q9Y4A8 694 aa18.75■□□□□ 0.59
SHKBP1-227ENST00000602011 WDFY3Q8IZQ1 3526 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms