RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ZSWIM1Q9BR11 485 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 LRRC3Q9BY71 257 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 NACA2Q9H009 215 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 TASP1Q9H6P5 420 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 CNGB3Q9NQW8 809 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 IL37Q9NZH6 218 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 UVRAGQ9P2Y5 699 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 RNF14Q9UBS8 474 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 CDH22Q9UJ99 828 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 SCML2Q9UQR0 700 aa10.56□□□□□ -0.72
UPF1-213ENST00000601981 TRAV19A0A0A6YYK7 116 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 FAM92AA1XBS5 289 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 HHLA1C9JL84 531 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 DPYSL4O14531 572 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 CALCAP01258 141 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 F11P03951 625 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 RALAP11233 206 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 LCP1P13796 627 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 CEBPBP17676 345 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 SSTR3P32745 418 aaPredicted RBP10.55□□□□□ -0.72
UPF1-213ENST00000601981 NSFP46459 744 aaKnown RBP10.55□□□□□ -0.72
UPF1-213ENST00000601981 RGS7P49802 495 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 TUBP50607 506 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 USP46P62068 366 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 NOMO3P69849 1222 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 CYP4F8P98187 520 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 PDCLQ13371 301 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 RPS6KA1Q15418 735 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 PMF1Q6P1K2 205 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 ZDHHC17Q8IUH5 632 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 NPAS3Q8IXF0 933 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 MCOLN2Q8IZK6 566 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 C1orf131Q8NDD1 294 aaKnown RBP10.55□□□□□ -0.72
UPF1-213ENST00000601981 ITFG1Q8TB96 612 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 IRGQQ8WZA9 623 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 ANKRD7Q92527 254 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 NXPE3Q969Y0 559 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 E2F7Q96AV8 911 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 ZNF653Q96CK0 615 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 TCEAL4Q96EI5 215 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 VCPIP1Q96JH7 1222 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 ULBP1Q9BZM6 244 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 IL21Q9HBE4 155 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 TRPC7Q9HCX4 862 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 CTTNBP2NLQ9P2B4 639 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 EPS15L1Q9UBC2 864 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 USP3Q9Y6I4 520 aa10.55□□□□□ -0.72
UPF1-213ENST00000601981 ZNF840PA6NDX5 716 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 BUB1BO60566 1050 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 SRGAP2O75044 1071 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 CKMP06732 381 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 USP17L7P0C7H9 530 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 LAMP2P13473 410 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 BMP1P13497 986 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 GJA1P17302 382 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 SP100P23497 879 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 CDH5P33151 784 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 CCR2P41597 374 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 C1QBPQ07021 282 aaKnown RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 ELF2Q15723 593 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 ERCC6LQ2NKX8 1250 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 HECTD3Q5T447 861 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 SNX30Q5VWJ9 437 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 NAA35Q5VZE5 725 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 BTBD8Q5XKL5 378 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 PM20D1Q6GTS8 502 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 MON1BQ7L1V2 547 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 GPRIN1Q7Z2K8 1008 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 PEX26Q7Z412 305 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 DAAM2Q86T65 1068 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 NT5DC3Q86UY8 548 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 ERICH1Q86X53 443 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 DDX42Q86XP3 938 aaKnown RBP eCLIP10.54□□□□□ -0.72
UPF1-213ENST00000601981 PHF13Q86YI8 300 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 CREG2Q8IUH2 290 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 ZDHHC14Q8IZN3 488 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 ZNF564Q8TBZ8 553 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 TSC1Q92574 1164 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 MCRS1Q96EZ8 462 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 SLC4A5Q9BY07 1137 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 KIF9Q9HAQ2 790 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 OSGEPQ9NPF4 335 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 OLA1Q9NTK5 396 aaKnown RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 CLIC5Q9NZA1 410 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 GMIPQ9P107 970 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 IGSF9Q9P2J2 1179 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.54□□□□□ -0.72
UPF1-213ENST00000601981 AMFRQ9UKV5 643 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 STRIP2Q9ULQ0 834 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 V9GYY5 206 aaPredicted RBP10.54□□□□□ -0.72
UPF1-213ENST00000601981 NCOR1O75376 2440 aa10.54□□□□□ -0.72
UPF1-213ENST00000601981 C2CD4DB7Z1M9 353 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 LOC730098B7Z3J9 87 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 E5RJQ4 531 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 TULP2O00295 520 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 MOSPD3O75425 235 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 CALB1P05937 261 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 ZDHHC11BP0C7U3 371 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 HDCP19113 662 aa10.53□□□□□ -0.72
UPF1-213ENST00000601981 WEE1P30291 646 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms