RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 DPYSL3Q14195 570 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 BBS12Q6ZW61 710 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 TTC13Q8NBP0 860 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 SLCO2A1Q92959 643 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 FRMD8P1Q9BZ68 369 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 PLEKHA4Q9H4M7 779 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 ABCC13Q9NSE7 274 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 CALCOCO1Q9P1Z2 691 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 INSL6Q9Y581 213 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 PCDHB12Q9Y5F1 795 aa18.39■□□□□ 0.53
SHKBP1-224ENST00000600718 RTN3O95197 1032 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 VNN2O95498 520 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 OR1D2P34982 312 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 GPR15P49685 360 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 EPHB4P54760 987 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 YWHAGP61981 247 aaKnown RBP eCLIP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 PITX1P78337 314 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 SNX1Q13596 522 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 DPYSL2Q16555 572 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 MGAT5BQ3V5L5 792 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 ZC3H12AQ5D1E8 599 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 DRICH1Q6PGQ1 229 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 JAMLQ86YT9 394 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 RFX6Q8HWS3 928 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 ARHGAP18Q8N392 663 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 FIBCD1Q8N539 461 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 EIF1ADQ8N9N8 165 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 ATL2Q8NHH9 583 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 GRK7Q8WTQ7 553 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 EDEM1Q92611 657 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 ZBED2Q9BTP6 218 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 PCDH18Q9HCL0 1135 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 GPATCH2LQ9NWQ4 482 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 FZD10Q9ULW2 581 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 AP4E1Q9UPM8 1137 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 SLC27A5Q9Y2P5 690 aa18.38■□□□□ 0.53
SHKBP1-224ENST00000600718 ADAM12O43184 909 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CST8O60676 142 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 KCNJ1P48048 391 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 AIF1P55008 147 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ROR1Q01973 937 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 IFRD2Q12894 506 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 DUSP4Q13115 394 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 NME3Q13232 169 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 TFDP2Q14188 446 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 BTBD8Q5XKL5 378 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 MON1AQ86VX9 555 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 FAM131BQ86XD5 332 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 GPR65Q8IYL9 337 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 TTC9BQ8N6N2 239 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CASKIN2Q8WXE0 1202 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ATG4AQ8WYN0 398 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 HERVK_113Q902F9 699 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CEP295NLQ96MC4 621 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CLSTN3Q9BQT9 956 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ERP44Q9BS26 406 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 PATJQ8NI35 1801 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 WDR27A2RRH5 827 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 C2CD2LO14523 706 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ECEL1O95672 775 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 L1CAMP32004 1257 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 TUFMP49411 452 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 LMNB2Q03252 620 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 KRT17Q04695 432 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CUL1Q13616 776 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 TERF2Q15554 542 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CA9Q16790 459 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 SDHAF4Q5VUM1 108 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 DENND5BQ6ZUT9 1274 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 SYDE1Q6ZW31 735 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 SCD5Q86SK9 330 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 CCDC185Q8N715 623 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 PHOSPHO2Q8TCD6 241 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 SEC14L1Q92503 715 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 RNF157Q96PX1 679 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 SEPT5Q99719 369 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ZNF670Q9BS34 389 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 HTATIP2Q9BUP3 242 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 DHX35Q9H5Z1 703 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 PIGVQ9NUD9 493 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 TMEM51Q9NW97 253 aa18.37■□□□□ 0.53
SHKBP1-224ENST00000600718 ZSCAN5CA6NGD5 496 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 URODP06132 367 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 GBP1P32455 592 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 DRG2P55039 364 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 MMRN1Q13201 1228 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 BEND6Q5SZJ8 279 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 TPGS2Q68CL5 300 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 SND1Q7KZF4 910 aaKnown RBP eCLIP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 IFT81Q8WYA0 676 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 NTAN1Q96AB6 310 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 CRISPLD1Q9H336 500 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 DDIT4Q9NX09 232 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 CXXC1Q9P0U4 656 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 HSFX1Q9UBD0 423 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 AFF4Q9UHB7 1163 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 DRG1Q9Y295 367 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 SLC4A7Q9Y6M7 1214 aa18.36■□□□□ 0.53
SHKBP1-224ENST00000600718 SYNJ2BP-COX16A0A087WUM0 186 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms