RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TRIM61Q5EBN2 209 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 PPP1R26Q5T8A7 1209 aaPredicted RBP18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 TOGARAM2Q6ZUX3 1019 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 CHPFQ8IZ52 775 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 TMEM174Q8WUU8 243 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 TMEM8AQ9HCN3 771 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 WDR35Q9P2L0 1181 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 RASAL2Q9UJF2 1139 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 DNMT3LQ9UJW3 386 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 EPG5Q9HCE0 2579 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 MAPK13O15264 365 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 CILPO75339 1184 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 CFIP05156 583 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 CHRM1P11229 460 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 NTSR1P30989 418 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 PLA2G4AP47712 749 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 RPL6Q02878 288 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 EFEMP1Q12805 493 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 MAP7D1Q3KQU3 841 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 GUF1Q8N442 669 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 SEMA4DQ92854 862 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 DUSP16Q9BY84 665 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 FSCN3Q9NQT6 498 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 TMEM74BQ9NUR3 256 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 HCN2Q9UL51 889 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 PCDHA5Q9Y5H7 936 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 RAD54BQ9Y620 910 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 MAP1BP46821 2468 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 CHD8Q9HCK8 2581 aa18.51■□□□□ 0.55
SHKBP1-223ENST00000600552 GREM1O60565 184 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 RALAP11233 206 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 GABRG2P18507 467 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 ITPKAP23677 461 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 DGKGP49619 791 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 KIF11P52732 1056 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 FOXC1Q12948 553 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 SH3PXD2AQ5TCZ1 1133 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 TCERG1LQ5VWI1 586 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 LYSMD4Q5XG99 296 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 KRT39Q6A163 491 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 SCD5Q86SK9 330 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 NUSAP1Q9BXS6 441 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 SCAND2PQ9GZW5 306 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 SLC6A17Q9H1V8 727 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 CYLDQ9NQC7 956 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 CALCOCO1Q9P1Z2 691 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 CYP8B1Q9UNU6 501 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 ATP6V1DQ9Y5K8 247 aa18.5■□□□□ 0.55
SHKBP1-223ENST00000600552 PI4KAP42356 2102 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 PRRT4C9JH25 899 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 EPB41P11171 864 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 PMLP29590 882 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 MXI1P50539 228 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 PNOCQ13519 176 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 NFIL3Q16649 462 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 DCAF17Q5H9S7 520 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 RSRC2Q7L4I2 434 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 TATDN2Q93075 761 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 ARID3AQ99856 593 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 GTPBP2Q9BX10 602 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 CISHQ9NSE2 258 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 CACNA2D2Q9NY47 1150 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 CEP192Q8TEP8 1941 aa18.49■□□□□ 0.55
SHKBP1-223ENST00000600552 FAM237AA0A1B0GTK4 181 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 A0A1W2PQ27 194 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 A0A1W2PQ64 194 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 A0A1W2PQD8 194 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 WASH3PC4AMC7 463 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 CDX4O14627 284 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 CETN3O15182 167 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 CACNG3O60359 315 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 STC2O76061 302 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 ZNF252P-AS1Q0IIN9 211 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 KIAA1211LQ6NV74 962 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 KIAA1324Q6UXG2 1013 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 TADA2BQ86TJ2 420 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 SYT12Q8IV01 421 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 DEFB124Q8NES8 71 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 KCNV2Q8TDN2 545 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 IPO4Q8TEX9 1081 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 TMEM176AQ96HP8 235 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 ADAMTS9Q9P2N4 1935 aa18.48■□□□□ 0.55
SHKBP1-223ENST00000600552 LAMA1P25391 3075 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 A0A1W2PQF6 199 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 SLC12A8A0AV02 714 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 AP5Z1O43299 807 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 SPINK2P20155 84 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 CORO1AP31146 461 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 ATXN3P54252 364 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 LMAN2Q12907 356 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 LRMPQ12912 555 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 SLC4A11Q8NBS3 891 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 FBXL13Q8NEE6 735 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 NDRG1Q92597 394 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 ERCC4Q92889 916 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 CCDC34Q96HJ3 373 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 RAB20Q9NX57 234 aa18.47■□□□□ 0.55
SHKBP1-223ENST00000600552 STX10O60499 249 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 KLKB1P03952 638 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms