RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MRPL28Q13084 256 aaKnown RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 ZNF513Q8N8E2 541 aaPredicted RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 P2RX7Q99572 595 aaKnown RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 CARD9Q9H257 536 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 CYTH3O43739 400 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 STK4Q13043 487 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 PAGE2BQ5JRK9 111 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 VAT1Q99536 393 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 SEPT3Q9UH03 358 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 C21orf59P57076 290 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 SETMARQ53H47 684 aaPredicted RBP21.06■□□□□ 0.96
UPF1-207ENST00000599848 ILDR2Q71H61 639 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 ZNF248Q8NDW4 579 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 ENOPH1Q9UHY7 261 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 SPHKAPQ2M3C7 1700 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 KPNA5O15131 536 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 YWHAZP63104 245 aaKnown RBP21.06■□□□□ 0.96
UPF1-207ENST00000599848 SMIM5Q71RC9 77 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 FBXO22Q8NEZ5 403 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 THOC1Q96FV9 657 aaKnown RBP21.06■□□□□ 0.96
UPF1-207ENST00000599848 ADNPQ9H2P0 1102 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 FANCEQ9HB96 536 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 ETNK1Q9HBU6 452 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 RAD51BO15315 384 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 AMD1P17707 334 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 RFX3P48380 749 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 SCNN1BP51168 640 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 AMHR2Q16671 573 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 RD3Q7Z3Z2 195 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 CPB2Q96IY4 423 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 SPATS2LQ9NUQ6 558 aaKnown RBP21.06■□□□□ 0.96
UPF1-207ENST00000599848 ALG6Q9Y672 507 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 DIP2AQ14689 1571 aa21.06■□□□□ 0.96
UPF1-207ENST00000599848 EIF4E1BA6NMX2 242 aaKnown RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 TEX33O43247 280 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 CYP24A1Q07973 514 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 METTL16Q86W50 562 aaKnown RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 FAM71DQ8N9W8 422 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 POLG2Q9UHN1 485 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 PADI4Q9UM07 663 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ALDH6A1Q02252 535 aaKnown RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 C11orf88Q6PI97 169 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 PHACTR1Q9C0D0 580 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 URADA6NGE7 173 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 KPNA3O00505 521 aaPredicted RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 WNT10BO00744 389 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 PAEPP09466 180 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 CLTBP09497 229 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ALDH18A1P54886 795 aaKnown RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 PLD3Q8IV08 490 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 SERAC1Q96JX3 654 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 SNTG2Q9NY99 539 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 TPBGLP0DKB5 382 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ENO3P13929 434 aaPredicted RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 CYP11B1P15538 503 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 TLX1P31314 330 aaPredicted RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 PURAQ00577 322 aaKnown RBP21.05■□□□□ 0.96
UPF1-207ENST00000599848 PPIGQ13427 754 aaKnown RBP eCLIP21.05■□□□□ 0.964e-7■■□□□ 14.1
UPF1-207ENST00000599848 E2F7Q96AV8 911 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ERGIC2Q96RQ1 377 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ADAM2Q99965 735 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 NT5MQ9NPB1 228 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 PSME2Q9UL46 239 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 CPS1P31327 1500 aa21.05■□□□□ 0.96
UPF1-207ENST00000599848 ATP5C1P36542 298 aaKnown RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 USP41Q3LFD5 358 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 TFDP3Q5H9I0 405 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 ARMC12Q5T9G4 340 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 FHDC1Q9C0D6 1143 aaPredicted RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 ACTR8Q9H981 624 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 ABCA9Q8IUA7 1624 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 ADM5C9JUS6 153 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 SUPT7LO94864 414 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 LPCAT1Q8NF37 534 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 ZSCAN18Q8TBC5 510 aaPredicted RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 UBA2Q9UBT2 640 aaPredicted RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 PCNAP12004 261 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 FGFR4P22455 802 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 OR1E1P30953 314 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 SNRPD1P62314 119 aaKnown RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 SLC9A5Q14940 896 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 SMAD1Q15797 465 aaKnown RBP21.04■□□□□ 0.96
UPF1-207ENST00000599848 STOX1Q6ZVD7 989 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 PI4K2AQ9BTU6 479 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 FICDQ9BVA6 458 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 SLC39A8Q9C0K1 460 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 ABCC13Q9NSE7 274 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 PCDHB9Q9Y5E1 797 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 FGFR1P11362 822 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 GRK4P32298 578 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 KCTD10Q9H3F6 313 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 UNC13BO14795 1591 aa21.04■□□□□ 0.96
UPF1-207ENST00000599848 LAG3P18627 525 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 ATP6V1C1P21283 382 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 SLC16A1P53985 500 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 PRKAA2P54646 552 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 CYP51A1Q16850 503 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 AGBL2Q5U5Z8 902 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 JAMLQ86YT9 394 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 PHC3Q8NDX5 983 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms