RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 HTR3DQ70Z44 454 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 PHLDB2Q86SQ0 1253 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 ZNF677Q86XU0 584 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 DNAAF5Q86Y56 855 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 BBS7Q8IWZ6 715 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 ADAM33Q9BZ11 813 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 NACA2Q9H009 215 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 PDCL3Q9H2J4 239 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 TBC1D17Q9HA65 648 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 FBRSL1Q9HCM7 1045 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 ABCC13Q9NSE7 274 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 MARCH2Q9P0N8 246 aa14.87□□□□□ -0.03
SHKBP1-217ENST00000598558 E2F8A0AVK6 867 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 PRR33A8MZF0 331 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 LSM8O95777 96 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 FERP16591 822 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 VCPP55072 806 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 PLCB2Q00722 1185 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 GOLGA8FQ08AF8 430 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 GOLGA8DPQ0D2H9 430 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 PDGFRLQ15198 375 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 CLEC16AQ2KHT3 1053 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 HGSNATQ68CP4 663 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 CC2D1AQ6P1N0 951 aaPredicted RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 MSANTD2Q6P1R3 559 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 RHBDF2Q6PJF5 856 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 Q6ZNB5 142 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 RSRC2Q7L4I2 434 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 ZNF571Q7Z3V5 609 aaPredicted RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 ERICH1Q86X53 443 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 XYLT1Q86Y38 959 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 FMNL3Q8IVF7 1028 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 FLCNQ8NFG4 579 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 ADAM32Q8TC27 787 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 DQX1Q8TE96 717 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 C1QTNF1Q9BXJ1 281 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 ECT2Q9H8V3 914 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 TAS2R14Q9NYV8 317 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 CAPN11Q9UMQ6 739 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 PIAS3Q9Y6X2 628 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 NUP210Q8TEM1 1887 aaPredicted RBP14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 COL4A2P08572 1712 aa14.86□□□□□ -0.03
SHKBP1-217ENST00000598558 A0A1W2PQJ5 194 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SPECC1L-ADORA2AF8WAN1 911 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 GJB6O95452 261 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 CYP17A1P05093 508 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 NCAM1P13591 858 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 GLULP15104 373 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 TARSP26639 723 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 CASP14P31944 242 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 PRKCIP41743 596 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 IFNAR2P48551 515 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 YWHAZP63104 245 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SLC6A3Q01959 620 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 PRKCQQ04759 706 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 TRIP4Q15650 581 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 ASIC2Q16515 512 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 ITPRIPL2Q3MIP1 535 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SFMBT2Q5VUG0 894 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 TRNP1Q6NT89 227 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SARM1Q6SZW1 724 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 MMS22LQ6ZRQ5 1243 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 DDX42Q86XP3 938 aaKnown RBP eCLIP14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 VSTM4Q8IW00 320 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 DEFB106AQ8N104 65 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 FBXL6Q8N531 539 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 TMEM105Q8N8V8 129 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 CSGALNACT1Q8TDX6 532 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 FAM149B1Q96BN6 582 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 C18orf8Q96DM3 657 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SLC2A13Q96QE2 648 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 NUP58Q9BVL2 599 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 HAUS4Q9H6D7 363 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 CALCOCO1Q9P1Z2 691 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 SH3BP1Q9Y3L3 701 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 ITIH6Q6UXX5 1313 aa14.85□□□□□ -0.03
SHKBP1-217ENST00000598558 KANSL1LA0AUZ9 987 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 ANTXRLA6NF34 631 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 DDX3XO00571 662 aaKnown RBP eCLIP14.84□□□□□ -0.033e-6■■■□□ 15.7
SHKBP1-217ENST00000598558 PLEKP08567 350 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 TFE3P19532 575 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 MMP8P22894 467 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 CTHP32929 405 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 GJA4P35212 333 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 KPNA1P52294 538 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 COG7P83436 770 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 MESP2Q0VG99 397 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 EIF4EBP2Q13542 120 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 DHCR24Q15392 516 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 OTUD1Q5VV17 481 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 BEND5Q7L4P6 421 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 TAC4Q86UU9 113 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 TMEM25Q86YD3 366 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 RNF139Q8WU17 664 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 NOX5Q96PH1 765 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 CDK5RAP1Q96SZ6 601 aaKnown RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 POPDC2Q9HBU9 364 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 LTB4R2Q9NPC1 389 aa14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 OLA1Q9NTK5 396 aaKnown RBP14.84□□□□□ -0.03
SHKBP1-217ENST00000598558 AGO1Q9UL18 857 aaKnown RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms