RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 Q6ZNB5 142 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 METTL3Q86U44 580 aaKnown RBP14.33□□□□□ -0.12
TRIM28-211ENST00000597968 NAT16Q8N8M0 369 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 FBXL13Q8NEE6 735 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 TCEAL3Q969E4 200 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 SMOC1Q9H4F8 434 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 APOBEC3GQ9HC16 384 aaKnown RBP14.33□□□□□ -0.12
TRIM28-211ENST00000597968 DNAJC17Q9NVM6 304 aaKnown RBP14.33□□□□□ -0.12
TRIM28-211ENST00000597968 SLC27A6Q9Y2P4 619 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 CDX4O14627 284 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-211ENST00000597968 CETN3O15182 167 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 CYP26A1O43174 497 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 ZNF202O95125 648 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 EPB41P11171 864 aaKnown RBP14.32□□□□□ -0.12
TRIM28-211ENST00000597968 DGKGP49619 791 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 MXI1P50539 228 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 ZNF445P59923 1031 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 ST3GAL2Q16842 350 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 ARHGAP17Q68EM7 881 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 SFTPA1Q8IWL2 248 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 PGBD3Q8N328 593 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 HMGB4Q8WW32 186 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 PIGKQ92643 395 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 TWNKQ96RR1 684 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 OSER1Q9NX31 292 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 RAB20Q9NX57 234 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 NAGPAQ9UK23 515 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 PILRBQ9UKJ0 227 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 ATG2BQ96BY7 2078 aa14.32□□□□□ -0.12
TRIM28-211ENST00000597968 PLXND1Q9Y4D7 1925 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 ACACBO00763 2458 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 A0A1W2PQF6 199 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 A0A1W2PQH9 124 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 NEDD8-MDP1E9PL57 170 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 SCAMP3O14828 347 aaKnown RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 SLC16A3O15427 465 aaKnown RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 TBX18O95935 607 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 IRF1P10914 325 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 GABRG2P18507 467 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 NOVA1P51513 510 aaKnown RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 YWHAEP62258 255 aaKnown RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 IRX4P78413 519 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 ORC1Q13415 861 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 DUOXA1Q1HG43 343 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 TRIM61Q5EBN2 209 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 RAB41Q5JT25 222 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 C10orf120Q5SQS8 335 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 PPP1R26Q5T8A7 1209 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 GPRIN1Q7Z2K8 1008 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 TTC30AQ86WT1 665 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 CHPFQ8IZ52 775 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 CPXM2Q8N436 756 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 ANKRD52Q8NB46 1076 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 TMEM176AQ96HP8 235 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 GSDMAQ96QA5 445 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 SLC2A11Q9BYW1 496 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 SLC32A1Q9H598 525 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 NMUR1Q9HB89 426 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 CD248Q9HCU0 757 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 MBD1Q9UIS9 605 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-211ENST00000597968 SLC6A14Q9UN76 642 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 INVSQ9Y283 1065 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 COQ4Q9Y3A0 265 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 NFE2L3Q9Y4A8 694 aa14.31□□□□□ -0.12
TRIM28-211ENST00000597968 STC2O76061 302 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PENKP01210 267 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 CISD3P0C7P0 127 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PRR29P0C7W0 189 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 TRIM49P0CI25 452 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 TRIM49CP0CI26 452 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 CD58P19256 250 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PGFP49763 221 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 FKBP3Q00688 224 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PDE4CQ08493 712 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 HNRNPDQ14103 355 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 EIF4HQ15056 248 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PM20D1Q6GTS8 502 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 PSAPL1Q6NUJ1 521 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 IPO4Q8TEX9 1081 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 UCMAQ8WVF2 138 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 RLN3Q8WXF3 142 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 FOXJ1Q92949 421 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 WBP2Q969T9 261 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 HEXIM2Q96MH2 286 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 IRX2Q9BZI1 471 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 GDPD2Q9HCC8 539 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 CISHQ9NSE2 258 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 OLA1Q9NTK5 396 aaKnown RBP14.3□□□□□ -0.12
TRIM28-211ENST00000597968 CALCOCO1Q9P1Z2 691 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 SUSD2Q9UGT4 822 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 KIAA1257Q9ULG3 409 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 STRIP2Q9ULQ0 834 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 ZFHX4Q86UP3 3567 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 SPTBN2O15020 2390 aa14.3□□□□□ -0.12
TRIM28-211ENST00000597968 KMT2BQ9UMN6 2715 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-211ENST00000597968 TPRP12270 2363 aaKnown RBP14.29□□□□□ -0.12
TRIM28-211ENST00000597968 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 ANTXRLA6NF34 631 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 TIMM44O43615 452 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 CYBBP04839 570 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms