RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FAM186B	Q8IYM0	893 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	EEF2KMT	Q96G04	330 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	P2RY11	Q96G91	374 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	NT5C1A	Q9BXI3	368 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	NIF3L1	Q9GZT8	377 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	EVL	Q9UI08	416 aa	Predicted RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	LSM7	Q9UK45	103 aa	Known RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	ZDHHC9	Q9Y397	364 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	MYH10	P35580	1976 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	ASPM	Q8IZT6	3477 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	MAPK13	O15264	365 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CILP	O75339	1184 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	TOP3B	O95985	862 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CFI	P05156	583 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	KRT13	P13646	458 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	ENG	P17813	658 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	NDUFV2	P19404	249 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	SPINK2	P20155	84 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	KRT85	P78386	507 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	RPL6	Q02878	288 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	GOLGA8F	Q08AF8	430 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	GOLGA8DP	Q0D2H9	430 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	DPYD	Q12882	1025 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	FOXC1	Q12948	553 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	BYSL	Q13895	437 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	ZNF394	Q53GI3	561 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776		Q6ZNB5	142 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	INTS8	Q75QN2	995 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CHPF	Q8IZ52	775 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	DEFB124	Q8NES8	71 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	KCNV2	Q8TDN2	545 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	SEMA4D	Q92854	862 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CCDC47	Q96A33	483 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	NUSAP1	Q9BXS6	441 aa	Known RBP	11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	SLC6A17	Q9H1V8	727 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	GOLPH3L	Q9H4A5	285 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CYP3A43	Q9HB55	503 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CD248	Q9HCU0	757 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CD93	Q9NPY3	652 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	CACNA2D2	Q9NY47	1150 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	PLK2	Q9NYY3	685 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	MARK1	Q9P0L2	795 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	DNMT3L	Q9UJW3	386 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	NAGPA	Q9UK23	515 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	PILRB	Q9UKJ0	227 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	STARD13	Q9Y3M8	1113 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	PCDHA5	Q9Y5H7	936 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	RAD54B	Q9Y620	910 aa		11.09	□□□□□ -0.63
LSM4-205	ENST00000597776	PLXND1	Q9Y4D7	1925 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	FAM237A	A0A1B0GTK4	181 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	STC2	O76061	302 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	KLKB1	P03952	638 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	HMBS	P08397	361 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	TRIM21	P19474	475 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	PSMC2	P35998	433 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	KIF11	P52732	1056 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	LMAN2	Q12907	356 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	NFIL3	Q16649	462 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	ZCWPW2	Q504Y3	356 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	KLHDC10	Q6PID8	442 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	NUDT18	Q6ZVK8	323 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	CCDC186	Q7Z3E2	898 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	GUF1	Q8N442	669 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	IPO4	Q8TEX9	1081 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	XPO6	Q96QU8	1125 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	ARID3A	Q99856	593 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	TMEM8A	Q9HCN3	771 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	PNPLA8	Q9NP80	782 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	WDR35	Q9P2L0	1181 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	CYP8B1	Q9UNU6	501 aa		11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	MYO18A	Q92614	2054 aa	Known RBP	11.08	□□□□□ -0.64
LSM4-205	ENST00000597776	C1QTNF9B	B2RNN3	333 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	WASH3P	C4AMC7	463 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	AP5Z1	O43299	807 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	CISD3	P0C7P0	127 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	C1QTNF9	P0C862	333 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	CEACAM1	P13688	526 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	CSRP1	P21291	193 aa	Known RBP	11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	RPL13	P26373	211 aa	Known RBP	11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	PLA2G4A	P47712	749 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	DGKG	P49619	791 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	EFEMP1	Q12805	493 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	ADAM9	Q13443	819 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	SPDYC	Q5MJ68	293 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	SDE2	Q6IQ49	451 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	SLC23A3	Q6PIS1	610 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	SLC36A4	Q6YBV0	504 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	KRBA2	Q6ZNG9	492 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	SLC41A1	Q8IVJ1	513 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	CCDC150	Q8NCX0	1101 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	OR2I1P	Q8NGU4	316 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	HEXIM2	Q96MH2	286 aa	Known RBP	11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	GABRG3	Q99928	467 aa		11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	GTPBP2	Q9BX10	602 aa	Known RBP	11.07	□□□□□ -0.64
LSM4-205	ENST00000597776	DUSP16	Q9BY84	665 aa		11.07	□□□□□ -0.64

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