RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SHISA7A6NL88 538 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 E5RJQ4 531 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 MDM4O15151 490 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 LTFP02788 710 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 CCDC172P0C7W6 258 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 IRF1P10914 325 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 MAGEA9P43362 315 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 SOX9P48436 509 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 FANCCQ00597 558 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 FMNL3Q8IVF7 1028 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 CLEC4CQ8WTT0 213 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 EDEM1Q92611 657 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 DCLK3Q9C098 648 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 NDRG2Q9UN36 371 aaKnown RBP15.73■□□□□ 0.11
UPF1-202ENST00000594243 ZNF510Q9Y2H8 683 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 MTF2Q9Y483 593 aaPredicted RBP15.73■□□□□ 0.11
UPF1-202ENST00000594243 MYO16Q9Y6X6 1858 aa15.73■□□□□ 0.11
UPF1-202ENST00000594243 SLC12A8A0AV02 714 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 DCNP07585 359 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 TARSP26639 723 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 CDH5P33151 784 aaPredicted RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 GJA4P35212 333 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 UBASH3AP57075 661 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 TAF3Q5VWG9 929 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 BEND5Q7L4P6 421 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 NOP9Q86U38 636 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 CCDC105Q8IYK2 499 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 C1orf131Q8NDD1 294 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 EPS8L1Q8TE68 723 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 IPO4Q8TEX9 1081 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 DDX1Q92499 740 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 FAM149B1Q96BN6 582 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 SYNCQ9H7C4 482 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 MYO6Q9UM54 1294 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 HELZP42694 1942 aaKnown RBP15.72■□□□□ 0.11
UPF1-202ENST00000594243 TICRRQ7Z2Z1 1910 aa15.72■□□□□ 0.11
UPF1-202ENST00000594243 COL4A2P08572 1712 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 TRDMT1O14717 391 aaKnown RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 CAPN9O14815 690 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 PAPSS1O43252 624 aaPredicted RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 GREM1O60565 184 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 STC2O76061 302 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 LSM8O95777 96 aaKnown RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 ADH1CP00326 375 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 GLI1P08151 1106 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 MMEP08473 750 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 NCAM1P13591 858 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 PLA2G5P39877 138 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 RPS9P46781 194 aaKnown RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 YWHAZP63104 245 aaKnown RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 CDR2Q01850 454 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 LRRC32Q14392 662 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 DHCR24Q15392 516 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 EFHC1Q5JVL4 640 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 DGKKQ5KSL6 1271 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 RHBDF2Q6PJF5 856 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 TXNDC11Q6PKC3 985 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 ZDHHC17Q8IUH5 632 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 BBS7Q8IWZ6 715 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 MSANTD4Q8NCY6 345 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 CLDN23Q96B33 292 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 PLD4Q96BZ4 506 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 FAM122AQ96E09 287 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 CPXM1Q96SM3 734 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 NUP58Q9BVL2 599 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 LMAN1LQ9HAT1 526 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 POPDC2Q9HBU9 364 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 DLGAP2Q9P1A6 1054 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 SFMBT1Q9UHJ3 866 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 HBS1LQ9Y450 684 aaKnown RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 PIEZO1Q92508 2521 aa15.71■□□□□ 0.11
UPF1-202ENST00000594243 KIF26AQ9ULI4 1882 aaPredicted RBP15.71■□□□□ 0.11
UPF1-202ENST00000594243 SCAMP3O14828 347 aaKnown RBP15.7■□□□□ 0.1
UPF1-202ENST00000594243 HMBSP08397 361 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 FERP16591 822 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 CHKAP35790 457 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 HARS2P49590 506 aaKnown RBP15.7■□□□□ 0.1
UPF1-202ENST00000594243 GALK1P51570 392 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 GAD2Q05329 585 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 GRSF1Q12849 480 aaKnown RBP eCLIP15.7■□□□□ 0.1
UPF1-202ENST00000594243 FZD5Q13467 585 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 PON2Q15165 354 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 MSANTD2Q6P1R3 559 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 ERICH1Q86X53 443 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 ZNF687Q8N1G0 1237 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 SYNPOQ8N3V7 929 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 DTWD2Q8NBA8 298 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 CD101Q93033 1021 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 WBP2Q969T9 261 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 P2RY13Q9BPV8 354 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 EDEM3Q9BZQ6 932 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 SPHK2Q9NRA0 654 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 ASNSD1Q9NWL6 643 aa15.7■□□□□ 0.1
UPF1-202ENST00000594243 NOCTQ9UK39 431 aaKnown RBP15.7■□□□□ 0.1
UPF1-202ENST00000594243 ARIH1Q9Y4X5 557 aaPredicted RBP15.7■□□□□ 0.1
UPF1-202ENST00000594243 GALR2O43603 387 aaPredicted RBP15.69■□□□□ 0.1
UPF1-202ENST00000594243 CYP17A1P05093 508 aa15.69■□□□□ 0.1
UPF1-202ENST00000594243 TPM3P06753 285 aa15.69■□□□□ 0.1
UPF1-202ENST00000594243 CHRNB1P11230 501 aa15.69■□□□□ 0.1
UPF1-202ENST00000594243 DRD1P21728 446 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms