RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 LRSAM1Q6UWE0 723 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 HTR3DQ70Z44 454 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 ZNF677Q86XU0 584 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 MIB1Q86YT6 1006 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 PASD1Q8IV76 773 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 FMNL3Q8IVF7 1028 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 SCUBE3Q8IX30 993 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 CCDC105Q8IYK2 499 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 ADGRG2Q8IZP9 1017 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 ZNF687Q8N1G0 1237 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 TTC8Q8TAM2 541 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 DDX1Q92499 740 aaKnown RBP12.46□□□□□ -0.41
LIG3-213ENST00000590630 NDRG1Q92597 394 aaKnown RBP12.46□□□□□ -0.41
LIG3-213ENST00000590630 EXOC4Q96A65 974 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 ANP32EQ9BTT0 268 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 MIS12Q9H081 205 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 PDCL3Q9H2J4 239 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 LINC00597Q9H2U6 94 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 RASAL2Q9UJF2 1139 aa12.46□□□□□ -0.41
LIG3-213ENST00000590630 LSM7Q9UK45 103 aaKnown RBP12.46□□□□□ -0.41
LIG3-213ENST00000590630 MTF2Q9Y483 593 aaPredicted RBP12.46□□□□□ -0.41
LIG3-213ENST00000590630 MDM4O15151 490 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 PAPSS1O43252 624 aaPredicted RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 GREM1O60565 184 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 STC2O76061 302 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 ADH1CP00326 375 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 IRF1P10914 325 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 COL9A1P20849 921 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 CDH5P33151 784 aaPredicted RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 GJA4P35212 333 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 RPS9P46781 194 aaKnown RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 MSANTD2Q6P1R3 559 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 TXNDC11Q6PKC3 985 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 BEND5Q7L4P6 421 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 CACNA2D4Q7Z3S7 1137 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 NOP9Q86U38 636 aaKnown RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 BBS7Q8IWZ6 715 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 WDTC1Q8N5D0 677 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 TMEM35BQ8NCS4 154 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 C1orf131Q8NDD1 294 aaKnown RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 CLEC4CQ8WTT0 213 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 EDEM1Q92611 657 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 CLDN23Q96B33 292 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 PPP1R13BQ96KQ4 1090 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 CPXM1Q96SM3 734 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 TSPY26PQ9H489 355 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 DLGAP2Q9P1A6 1054 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 NOCTQ9UK39 431 aaKnown RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 MYO6Q9UM54 1294 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 NDRG2Q9UN36 371 aaKnown RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 ARIH1Q9Y4X5 557 aaPredicted RBP12.45□□□□□ -0.42
LIG3-213ENST00000590630 KIAA1549LQ6ZVL6 1849 aa12.45□□□□□ -0.42
LIG3-213ENST00000590630 TRDMT1O14717 391 aaKnown RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 SCAMP3O14828 347 aaKnown RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 CYP17A1P05093 508 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 DCNP07585 359 aaKnown RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 CCDC172P0C7W6 258 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 FANCCQ00597 558 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 CDR2Q01850 454 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 LRRC32Q14392 662 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 NR1I3Q14994 352 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 PON2Q15165 354 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 DHCR24Q15392 516 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 TAF3Q5VWG9 929 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 Q6ZNB5 142 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 IPO4Q8TEX9 1081 aaKnown RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 FAM149B1Q96BN6 582 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 PLD4Q96BZ4 506 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 CHFRQ96EP1 664 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 NAP1L5Q96NT1 182 aaPredicted RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 IER2Q9BTL4 223 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 DCLK3Q9C098 648 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 SYNCQ9H7C4 482 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 ZNF510Q9Y2H8 683 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 HBS1LQ9Y450 684 aaKnown RBP12.44□□□□□ -0.42
LIG3-213ENST00000590630 ATG2BQ96BY7 2078 aa12.44□□□□□ -0.42
LIG3-213ENST00000590630 WDR87Q6ZQQ6 2873 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 SLC12A8A0AV02 714 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 GALR2O43603 387 aaPredicted RBP12.43□□□□□ -0.42
LIG3-213ENST00000590630 GLI1P08151 1106 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 MMEP08473 750 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 ADH5P11766 374 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 NCAM1P13591 858 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 UBASH3AP57075 661 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 YWHAZP63104 245 aaKnown RBP12.43□□□□□ -0.42
LIG3-213ENST00000590630 GRSF1Q12849 480 aaKnown RBP eCLIP12.43□□□□□ -0.42
LIG3-213ENST00000590630 FZD5Q13467 585 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 CCINQ13939 588 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 PTPN20Q4JDL3 420 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 TMEM196Q5HYL7 178 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 EFHC1Q5JVL4 640 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 DGKKQ5KSL6 1271 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 RHBDF2Q6PJF5 856 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 TRIM72Q6ZMU5 477 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 TOGARAM2Q6ZUX3 1019 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 ZDHHC17Q8IUH5 632 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 SYNPOQ8N3V7 929 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 DTWD2Q8NBA8 298 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 MSANTD4Q8NCY6 345 aa12.43□□□□□ -0.42
LIG3-213ENST00000590630 WBP2Q969T9 261 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms