RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IVLP07476 585 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 ABHD2P08910 425 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 ZSCAN5DPP0CG00 497 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 TFE3P19532 575 aaPredicted RBP14.75□□□□□ -0.05
LIG3-205ENST00000585941 CYP2F1P24903 491 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 ATP5OP48047 213 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 NDUFV1P49821 464 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 RNASELQ05823 741 aaKnown RBP14.75□□□□□ -0.05
LIG3-205ENST00000585941 PAN2Q504Q3 1202 aaKnown RBP14.75□□□□□ -0.05
LIG3-205ENST00000585941 BEND5Q7L4P6 421 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 PQLC3Q8N755 202 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 GLIS1Q8NBF1 620 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 PATJQ8NI35 1801 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 SEPT8Q92599 483 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 RTP4Q96DX8 246 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 CAPS2Q9BXY5 557 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 TMEM51Q9NW97 253 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 H3BRJ5 948 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 M0QYT0 321 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 RASGRF2O14827 1237 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 EIF3HO15372 352 aaKnown RBP eCLIP14.74□□□□□ -0.05
LIG3-205ENST00000585941 HOXA2O43364 376 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 TCEA3O75764 348 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PARNO95453 639 aaKnown RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 AGTP01019 485 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 LTFP02788 710 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 SHBGP04278 402 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 ETS1P14921 441 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 RPL22P35268 128 aaKnown RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 ZNF135P52742 658 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 DEUP1Q05D60 604 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 CA9Q16790 459 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PLEKHG4Q58EX7 1191 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PM20D1Q6GTS8 502 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 MFSD5Q6N075 450 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 CENPUQ71F23 418 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 CDKL3Q8IVW4 592 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 UNC45BQ8IWX7 931 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 COLGALT2Q8IYK4 626 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 ABI1Q8IZP0 508 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 SH2D3CQ8N5H7 860 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 NTAN1Q96AB6 310 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PAK6Q9NQU5 681 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 TBC1D13Q9NVG8 400 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 BCCIPQ9P287 314 aaKnown RBP eCLIP14.74□□□□□ -0.05
LIG3-205ENST00000585941 FARP1Q9Y4F1 1045 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 CENPFP49454 3210 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 SF3B1O75533 1304 aaKnown RBP eCLIP14.74□□□□□ -0.054e-6■■■■■ 117.9
LIG3-205ENST00000585941 SYN3O14994 580 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 RGS16O15492 202 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 OAZ2O95190 189 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 YY1P25490 414 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 ATP5DP30049 168 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 MAGEA4P43358 317 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 CTCFP49711 727 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 EFHC2Q5JST6 749 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 C1orf228Q6PIY5 440 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 LEKR1Q6ZMV7 388 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PRUNE1Q86TP1 453 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 DCP1BQ8IZD4 617 aaKnown RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 CCDC185Q8N715 623 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 FAM71DQ8N9W8 422 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 HASPINQ8TF76 798 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PRCCQ92733 491 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 TLCD1Q96CP7 247 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 SERPINB12Q96P63 405 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 CSPG4P5Q96PW8 444 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 KCTD15Q96SI1 283 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 KCNK16Q96T55 309 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 ADAM33Q9BZ11 813 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 FRMD8Q9BZ67 464 aaPredicted RBP14.74□□□□□ -0.05
LIG3-205ENST00000585941 UNC93B1Q9H1C4 597 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 MTMR10Q9NXD2 777 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 NINJ2Q9NZG7 142 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PAK5Q9P286 719 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 PCDHB7Q9Y5E2 793 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 NLRC5Q86WI3 1866 aa14.74□□□□□ -0.05
LIG3-205ENST00000585941 YJEFN3A6XGL0 299 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 HACD1B0YJ81 288 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 E7ENQ6 273 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ENPP3O14638 875 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 NRP1O14786 923 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 DDHD2O94830 711 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ACSL3O95573 720 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 BDNFP23560 247 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 GDF10P55107 478 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ARL4CP56559 192 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 SCAPQ12770 1279 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 STAT4Q14765 748 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 HIF1AQ16665 826 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 KYNUQ16719 465 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 NPNTQ6UXI9 565 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 PPP1R21Q6ZMI0 780 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ZC3H18Q86VM9 953 aaKnown RBP14.73□□□□□ -0.05
LIG3-205ENST00000585941 FAM131BQ86XD5 332 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ZNF280BQ86YH2 543 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 SPATA2LQ8IUW3 424 aaPredicted RBP14.73□□□□□ -0.05
LIG3-205ENST00000585941 OR10T2Q8NGX3 314 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 SH3TC2Q8TF17 1288 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 NDRG1Q92597 394 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms