RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PRMT2P55345 433 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 HNRNPH2P55795 449 aaKnown RBP11.71□□□□□ -0.53
LIG3-204ENST00000585740 GUCY1A3Q02108 690 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 ADCY1Q08828 1119 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 RASA2Q15283 850 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 CCDC142Q17RM4 750 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 SKIDA1Q1XH10 827 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 CLEC20AQ6ZU45 233 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 PAQR9Q6ZVX9 377 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 B4GALNT4Q76KP1 1039 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 ECHDC2Q86YB7 292 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 TDRPQ86YL5 185 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 UNC45BQ8IWX7 931 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 DEFB106AQ8N104 65 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 THEM5Q8N1Q8 247 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 SCML4Q8N228 414 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 PQLC3Q8N755 202 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 PLD5Q8N7P1 536 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 NAT8LQ8N9F0 302 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 PCDH19Q8TAB3 1148 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 UHMK1Q8TAS1 419 aaKnown RBP11.71□□□□□ -0.53
LIG3-204ENST00000585740 MYCBPAPQ8TBZ2 947 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 RAET1EQ8TD07 263 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 CLEC4CQ8WTT0 213 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 IRGQQ8WZA9 623 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 FAM149B1Q96BN6 582 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 SLC9A7Q96T83 725 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 NPY6RQ99463 290 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 ADAM2Q99965 735 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 FERMT1Q9BQL6 677 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 ACBD6Q9BR61 282 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 FAM107BQ9H098 131 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 DHX35Q9H5Z1 703 aaKnown RBP11.71□□□□□ -0.53
LIG3-204ENST00000585740 NRDE2Q9H7Z3 1164 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 POPDC2Q9HBU9 364 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 CRTAC1Q9NQ79 661 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 KRT82Q9NSB4 513 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 TMEM51Q9NW97 253 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 FETUBQ9UGM5 382 aa11.71□□□□□ -0.53
LIG3-204ENST00000585740 PTPRDP23468 1912 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 SF3B1O75533 1304 aaKnown RBP eCLIP11.7□□□□□ -0.544e-6■■■■■ 117.9
LIG3-204ENST00000585740 CASTOR2A6NHX0 329 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 SMIM23A6NLE4 172 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 E7ESA3 106 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 M0QZQ0 153 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 CLDN5O00501 218 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 NDUFAB1O14561 156 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 MGEA5O60502 916 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 ATP2C2O75185 946 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 EOMESO95936 686 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 F9P00740 461 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 TKTL1P51854 596 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 RNASELQ05823 741 aaKnown RBP11.7□□□□□ -0.54
LIG3-204ENST00000585740 ZC3H12AQ5D1E8 599 aaKnown RBP11.7□□□□□ -0.54
LIG3-204ENST00000585740 RAB41Q5JT25 222 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 C1orf228Q6PIY5 440 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 DCLRE1AQ6PJP8 1040 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 MICALCLQ6ZW33 695 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 BNIPLQ7Z465 357 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 PRUNE1Q86TP1 453 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 PDIK1LQ8N165 341 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 FAM71DQ8N9W8 422 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 ATP11CQ8NB49 1132 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 URGCPQ8TCY9 931 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 CPT1BQ92523 772 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 NT5C3BQ969T7 300 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 C9orf72Q96LT7 481 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 KCTD15Q96SI1 283 aaPredicted RBP11.7□□□□□ -0.54
LIG3-204ENST00000585740 SELENOSQ9BQE4 189 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 PNPLA8Q9NP80 782 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 RGS18Q9NS28 235 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 DNAJC17Q9NVM6 304 aaKnown RBP11.7□□□□□ -0.54
LIG3-204ENST00000585740 GPATCH2LQ9NWQ4 482 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 SAE1Q9UBE0 346 aaPredicted RBP11.7□□□□□ -0.54
LIG3-204ENST00000585740 SLC24A2Q9UI40 661 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 FZD10Q9ULW2 581 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 PATJQ8NI35 1801 aa11.7□□□□□ -0.54
LIG3-204ENST00000585740 GMNCA6NCL1 334 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 EBAG9O00559 213 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 CAPN9O14815 690 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SPAG6O75602 509 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 FAM107AO95990 144 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 COL6A1P12109 1028 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SLCO1A2P46721 670 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 GDF10P55107 478 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 MAP3K7CLP57077 242 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 DAOAP59103 153 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 BASP1P80723 227 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 TSPY1Q01534 308 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 DEUP1Q05D60 604 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PDIA2Q13087 525 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 CA9Q16790 459 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 LONRF1Q17RB8 773 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 KLHL38Q2WGJ6 581 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 TIGD5Q53EQ6 642 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 RAB6CQ53S08 254 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 DCAF6Q58WW2 860 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SLC45A4Q5BKX6 768 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PPP6R3Q5H9R7 873 aaPredicted RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 INTS6LQ5JSJ4 861 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms