RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PSEN1P49768 467 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 LRRC63Q05C16 580 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 GOLGA8FQ08AF8 430 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 GOLGA8DPQ0D2H9 430 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 LRMPQ12912 555 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 RNF43Q68DV7 783 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 TRMT11Q7Z4G4 463 aaKnown RBP21.54■■□□□ 1.04
SHMT1-209ENST00000582653 TTC30AQ86WT1 665 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 SLC35C1Q96A29 364 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 LSM14BQ9BX40 385 aaKnown RBP21.54■■□□□ 1.04
SHMT1-209ENST00000582653 WDR35Q9P2L0 1181 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 ARMCX3Q9UH62 379 aaPredicted RBP21.54■■□□□ 1.04
SHMT1-209ENST00000582653 USP3Q9Y6I4 520 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 TRIM24O15164 1050 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 GADD45BO75293 160 aaPredicted RBP21.53■■□□□ 1.04
SHMT1-209ENST00000582653 BCKDHBP21953 392 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 BYSLQ13895 437 aaKnown RBP21.53■■□□□ 1.04
SHMT1-209ENST00000582653 C10orf120Q5SQS8 335 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 TCEAL6Q6IPX3 200 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 CCDC186Q7Z3E2 898 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 TTC39CQ8N584 583 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 TERB1Q8NA31 727 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 TCEAL3Q969E4 200 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 XPO6Q96QU8 1125 aaKnown RBP21.53■■□□□ 1.04
SHMT1-209ENST00000582653 DNMT3LQ9UJW3 386 aa21.53■■□□□ 1.04
SHMT1-209ENST00000582653 PSMA7O14818 248 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 KHNYNO15037 678 aaKnown RBP21.52■■□□□ 1.04
SHMT1-209ENST00000582653 BMP6P22004 513 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 CUL2Q13617 745 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 SPDYCQ5MJ68 293 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 ARHGAP17Q68EM7 881 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 KLHL10Q6JEL2 608 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 PIGZQ86VD9 579 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 ZNF513Q8N8E2 541 aaPredicted RBP21.52■■□□□ 1.04
SHMT1-209ENST00000582653 RLN3Q8WXF3 142 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 DHTKD1Q96HY7 919 aaPredicted RBP21.52■■□□□ 1.04
SHMT1-209ENST00000582653 UBXN6Q9BZV1 441 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 MARK1Q9P0L2 795 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 LSM7Q9UK45 103 aaKnown RBP21.52■■□□□ 1.04
SHMT1-209ENST00000582653 HCN2Q9UL51 889 aa21.52■■□□□ 1.04
SHMT1-209ENST00000582653 ABCA7Q8IZY2 2146 aa21.52■■□□□ 1.03
SHMT1-209ENST00000582653 LAMA1P25391 3075 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 TULP2O00295 520 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 MAP3K13O43283 966 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 STIM1Q13586 685 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 MAP7D1Q3KQU3 841 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 C10orf76Q5T2E6 689 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 N4BP2L1Q5TBK1 243 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-209ENST00000582653 TPGS1Q6ZTW0 290 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 TADA2BQ86TJ2 420 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 MIB1Q86YT6 1006 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 ELOA2Q8IYF1 753 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-209ENST00000582653 PGBD3Q8N328 593 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 BBS2Q9BXC9 721 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 GTPBP4Q9BZE4 634 aaKnown RBP21.51■■□□□ 1.03
SHMT1-209ENST00000582653 FAM124BQ9H5Z6 455 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-209ENST00000582653 CLIC5Q9NZA1 410 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 BCCIPQ9P287 314 aaKnown RBP eCLIP21.51■■□□□ 1.03
SHMT1-209ENST00000582653 SPTBN2O15020 2390 aa21.51■■□□□ 1.03
SHMT1-209ENST00000582653 PPP1R3GB7ZBB8 358 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 NEDD8-MDP1E9PL57 170 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 BIN1O00499 593 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 CACNG3O60359 315 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 KCNK5O95279 499 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 TYRP14679 529 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 NTSR1P30989 418 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 DHPSP49366 369 aaPredicted RBP21.5■■□□□ 1.03
SHMT1-209ENST00000582653 GOLGA7BQ2TAP0 167 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 GRAMD4Q6IC98 578 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 LPCAT2Q7L5N7 544 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 FRMD1Q8N878 549 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 ANKRD52Q8NB46 1076 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 HMGB4Q8WW32 186 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 NDRG1Q92597 394 aaKnown RBP21.5■■□□□ 1.03
SHMT1-209ENST00000582653 SPACA7Q96KW9 195 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 EDEM2Q9BV94 578 aa21.5■■□□□ 1.03
SHMT1-209ENST00000582653 DNAJC17Q9NVM6 304 aaKnown RBP21.5■■□□□ 1.03
SHMT1-209ENST00000582653 TCRBV21S2A2A0A5A6 115 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 LNP1A1A4G5 178 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 C4orf47A7E2U8 309 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 STC2O76061 302 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 HMBSP08397 361 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 RALAP11233 206 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 FMO5P49326 533 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 COG7P83436 770 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 PDE4CQ08493 712 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 EFEMP1Q12805 493 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 CCDC40Q4G0X9 1142 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 RAB41Q5JT25 222 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 TTI2Q6NXR4 508 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 Q6ZNB5 142 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 CYP2U1Q7Z449 544 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 NELFBQ8WX92 580 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 BHMTQ93088 406 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 CDK5RAP1Q96SZ6 601 aaKnown RBP21.49■■□□□ 1.03
SHMT1-209ENST00000582653 METTL14Q9HCE5 456 aaKnown RBP21.49■■□□□ 1.03
SHMT1-209ENST00000582653 MBD1Q9UIS9 605 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-209ENST00000582653 RASAL2Q9UJF2 1139 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 FBXO10Q9UK96 956 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 TSPAN16Q9UKR8 245 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms