RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 GATA5Q9BWX5 397 aaPredicted RBP4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 CDH19Q9H159 772 aa4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 TXLNGQ9NUQ3 528 aa4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 TMEM45AQ9NWC5 275 aa4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 ZSCAN32Q9NX65 697 aa4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 THRAP3Q9Y2W1 955 aaKnown RBP4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 SPATA31A1Q5TZJ5 1347 aa4.15□□□□□ -1.75
SMCHD1-206ENST00000581631 C16orf96A6NNT2 1141 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 H3BML4 177 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 RRP9O43818 475 aaKnown RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 PRAMEF2O60811 474 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 ATG13O75143 517 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 NDUFB8O95169 186 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 MYBP10242 640 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 HGFP14210 728 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 HTR1BP28222 390 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 HOXA7P31268 230 aaPredicted RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 IL6STP40189 918 aaPredicted RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 MTHFSP49914 203 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 EPHB1P54762 984 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 RAB32Q13637 225 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 KPNB1Q14974 876 aaKnown RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 ASIC2Q16515 512 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 FAM110CQ1W6H9 321 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 PRTGQ2VWP7 1150 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 PLEKHG6Q3KR16 790 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 DGKKQ5KSL6 1271 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 MANEAQ5SRI9 462 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 RFX8Q6ZV50 586 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 USP49Q70CQ1 688 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 FAM57BQ71RH2 274 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 MEIS3Q99687 375 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 SCNM1Q9BWG6 230 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 ZNF518BQ9C0D4 1074 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 NMRK2Q9NPI5 230 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 MSRB1Q9NZV6 116 aa4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 RGS17Q9UGC6 210 aaPredicted RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 NOB1Q9ULX3 412 aaKnown RBP4.14□□□□□ -1.75
SMCHD1-206ENST00000581631 TRBV5-3A0A0A0MS03 114 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 MBD3L4A6NDZ8 208 aaPredicted RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 MBD3L3A6NE82 208 aaPredicted RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 IFITM10A6NMD0 228 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 UBXN7O94888 489 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 KITP10721 976 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 HSPA6P17066 643 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 ADRA1DP25100 572 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 INSCQ1MX18 579 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 GSG1LQ6UXU4 331 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 RBM23Q86U06 439 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 DENND1CQ8IV53 801 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 C16orf71Q8IYS4 520 aaPredicted RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 MPP5Q8N3R9 675 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 PPP1R35Q8TAP8 253 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 SPSB4Q96A44 273 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 MIB2Q96AX9 1013 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 AIFM3Q96NN9 605 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 FCRL5Q96RD9 977 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 PPP1R9BQ96SB3 815 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 ACO2Q99798 780 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 ARHGAP39Q9C0H5 1083 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 NUAK2Q9H093 628 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 A1CFQ9NQ94 594 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 GJB4Q9NTQ9 266 aa4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 SIRT4Q9Y6E7 314 aaPredicted RBP4.13□□□□□ -1.75
SMCHD1-206ENST00000581631 TMEM272A0A1B0GTI8 110 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 SLC22A23A1A5C7 686 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 H7C4K7 107 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 RFPL1O75677 317 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 S100BP04271 92 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 PARP1P09874 1014 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 RPS6KB1P23443 525 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 POLD2P49005 469 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 ALDH7A1P49419 539 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 PGDP52209 483 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 AGFG1P52594 562 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 PFKFB3Q16875 520 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 CACHD1Q5VU97 1274 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 TTLL5Q6EMB2 1281 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 EPM2AIP1Q7L775 607 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 IL31RAQ8NI17 732 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 SLC35G2Q8TBE7 412 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 TAAR9Q96RI9 348 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 DECR2Q9NUI1 292 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 VPS51Q9UID3 782 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 COG5Q9UP83 839 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 PAXBP1Q9Y5B6 917 aa4.12□□□□□ -1.75
SMCHD1-206ENST00000581631 LOC102723971A0A1B0GUV8 181 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 A0A1W2PPC1 479 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 A0A1W2PPL8 197 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 TBX3O15119 743 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 PRPF3O43395 683 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 TBC1D4O60343 1298 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 RASAL1O95294 804 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 CD63P08962 238 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 GATMP50440 423 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 KRTAP5-4Q6L8H1 288 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 DAAM2Q86T65 1068 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 ZBTB34Q8NCN2 500 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 NR4A3Q92570 626 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms