RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 MED7O43513 233 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 FYNP06241 537 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 HOXC13P31276 330 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 PDCLQ13371 301 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 IQCB1Q15051 598 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 SYCP1Q15431 976 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 LY6G5CQ5SRR4 150 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 SFTPA1Q8IWL2 248 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 PIWIL1Q96J94 861 aaKnown RBP21.08■□□□□ 0.97
SS18-218ENST00000581021 P2RY13Q9BPV8 354 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 NAT10Q9H0A0 1025 aaKnown RBP21.08■□□□□ 0.97
SS18-218ENST00000581021 MARCH2Q9P0N8 246 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 PCDHGC3Q9UN70 934 aa21.08■□□□□ 0.97
SS18-218ENST00000581021 E5RJQ4 531 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 NCAM2O15394 837 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 PAPSS1O43252 624 aaPredicted RBP21.07■□□□□ 0.96
SS18-218ENST00000581021 HMBSP08397 361 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 MAGEA9P43362 315 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 SLC6A11P48066 632 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 ZNF165P49910 485 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 BTBD8Q5XKL5 378 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 RSRC2Q7L4I2 434 aaKnown RBP21.07■□□□□ 0.96
SS18-218ENST00000581021 TMEM25Q86YD3 366 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 SCUBE3Q8IX30 993 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 STK32AQ8WU08 396 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 IRGQQ8WZA9 623 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 CPXM1Q96SM3 734 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 CDK5RAP1Q96SZ6 601 aaKnown RBP21.07■□□□□ 0.96
SS18-218ENST00000581021 STK33Q9BYT3 514 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 PRMT8Q9NR22 394 aaPredicted RBP21.07■□□□□ 0.96
SS18-218ENST00000581021 ST7Q9NRC1 585 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 TBC1D14Q9P2M4 693 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 MYOFQ9NZM1 2061 aa21.07■□□□□ 0.96
SS18-218ENST00000581021 MSI1O43347 362 aaKnown RBP21.06■□□□□ 0.96
SS18-218ENST00000581021 CYP11B1P15538 503 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 JAM2P57087 298 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 POLR2FP61218 127 aaKnown RBP21.06■□□□□ 0.96
SS18-218ENST00000581021 PTK2Q05397 1052 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 LRRC32Q14392 662 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 FKBP15Q5T1M5 1219 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 SMYD5Q6GMV2 418 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 TSSK4Q6SA08 328 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 TADA2BQ86TJ2 420 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 TMEM110Q86TL2 294 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 C1orf131Q8NDD1 294 aaKnown RBP21.06■□□□□ 0.96
SS18-218ENST00000581021 DDX1Q92499 740 aaKnown RBP21.06■□□□□ 0.96
SS18-218ENST00000581021 CD101Q93033 1021 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 SFMBT1Q9UHJ3 866 aa21.06■□□□□ 0.96
SS18-218ENST00000581021 SLC12A8A0AV02 714 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 FAM170AA1A519 330 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 FBXO21O94952 628 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 ADH1CP00326 375 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 LTFP02788 710 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 SP9P0CG40 484 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 CHRM1P11229 460 aaPredicted RBP21.05■□□□□ 0.96
SS18-218ENST00000581021 ADH5P11766 374 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 TDGF1P13385 188 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 CDK11BP21127 795 aaKnown RBP21.05■□□□□ 0.96
SS18-218ENST00000581021 SATB1Q01826 763 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 UBXN1Q04323 297 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 GRSF1Q12849 480 aaKnown RBP eCLIP21.05■□□□□ 0.96
SS18-218ENST00000581021 ZSCAN23Q3MJ62 389 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 DGKKQ5KSL6 1271 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 MSANTD2Q6P1R3 559 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 NOP9Q86U38 636 aaKnown RBP21.05■□□□□ 0.96
SS18-218ENST00000581021 FMNL3Q8IVF7 1028 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 ETFBKMTQ8IXQ9 262 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 PHTF2Q8N3S3 785 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 ATOH1Q92858 354 aaPredicted RBP21.05■□□□□ 0.96
SS18-218ENST00000581021 OTUB2Q96DC9 234 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 ERGIC2Q96RQ1 377 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 NLRC4Q9NPP4 1024 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 SPHK2Q9NRA0 654 aa21.05■□□□□ 0.96
SS18-218ENST00000581021 POLR3BQ9NW08 1133 aaPredicted RBP21.05■□□□□ 0.96
SS18-218ENST00000581021 KIAA1549LQ6ZVL6 1849 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 TEX33O43247 280 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 HOXC11O43248 304 aaPredicted RBP21.04■□□□□ 0.96
SS18-218ENST00000581021 TPM2P07951 284 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 CORO1AP31146 461 aaKnown RBP21.04■□□□□ 0.96
SS18-218ENST00000581021 NR1H3Q13133 447 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 TAF5Q15542 800 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 ANKRD20A12PQ8NF67 263 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 FAM122AQ96E09 287 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 LHX5Q9H2C1 402 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 CBX8Q9HC52 389 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 ABCC13Q9NSE7 274 aa21.04■□□□□ 0.96
SS18-218ENST00000581021 NOCTQ9UK39 431 aaKnown RBP21.04■□□□□ 0.96
SS18-218ENST00000581021 LSM7Q9UK45 103 aaKnown RBP21.04■□□□□ 0.96
SS18-218ENST00000581021 TRIM24O15164 1050 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 LAMTOR5O43504 91 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 RNF40O75150 1001 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 ERBB2P04626 1255 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 COG7P83436 770 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 AMPD2Q01433 879 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 GOLGA8FQ08AF8 430 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 GOLGA8DPQ0D2H9 430 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 TRIP4Q15650 581 aaPredicted RBP21.03■□□□□ 0.96
SS18-218ENST00000581021 PTPN20Q4JDL3 420 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 TAF3Q5VWG9 929 aa21.03■□□□□ 0.96
SS18-218ENST00000581021 MAMSTRQ6ZN01 415 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms