RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, human

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCE1-215	ENST00000578995	CYB561D2	O14569	222 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PER2	O15055	1255 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TGM5	O43548	720 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ATP2C2	O75185	946 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CILP	O75339	1184 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TADA2A	O75478	443 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	UROD	P06132	367 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CEACAM5	P06731	702 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CELA3B	P08861	270 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	POU2F2	P09086	479 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	OR4Q2	P0C623	313 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ODC1	P11926	461 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	KRT13	P13646	458 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ATF6	P18850	670 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ACAT1	P24752	427 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PIK3CA	P42336	1068 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NDUFV1	P49821	464 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	RAD23B	P54727	409 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	JAM2	P57087	298 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	GCNT1	Q02742	428 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	YWHAH	Q04917	246 aa	Predicted RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ZP2	Q05996	745 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ELAVL2	Q12926	359 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	GPR17	Q13304	367 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CUL2	Q13617	745 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SMC1A	Q14683	1233 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NR1I3	Q14994	352 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PTPN21	Q16825	1174 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SGSM1	Q2NKQ1	1148 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ZNF699	Q32M78	642 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	WDR72	Q3MJ13	1102 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CCDC40	Q4G0X9	1142 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	VWA3B	Q502W6	1294 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SPOUT1	Q5T280	376 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	E4F1	Q66K89	784 aa	Predicted RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	OVOS1	Q6IE37	1185 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ANKS3	Q6ZW76	656 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ADGRF2	Q8IZF7	708 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FUK	Q8N0W3	1084 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CRYBG2	Q8N1P7	616 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TMEM86A	Q8N2M4	240 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SLC4A11	Q8NBS3	891 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ZMIZ2	Q8NF64	920 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SHC3	Q92529	594 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SUSD6	Q92537	303 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PABPC5	Q96DU9	382 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NAP1L5	Q96NT1	182 aa	Predicted RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ERGIC2	Q96RQ1	377 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SYT11	Q9BT88	431 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	RHOBTB2	Q9BYZ6	727 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	MMRN2	Q9H8L6	949 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NGRN	Q9NPE2	291 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PLCB1	Q9NQ66	1216 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	MRPL17	Q9NRX2	175 aa	Known RBP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CEP72	Q9P209	647 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	STK39	Q9UEW8	545 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	SNX9	Q9Y5X1	595 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CDY1	Q9Y6F8	540 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TECTA	O75443	2155 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ZNF318	Q5VUA4	2279 aa		4.04	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ANKRD36	A6QL64	1941 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	MYO18A	Q92614	2054 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ATG2B	Q96BY7	2078 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995		A0A1W2PQC6	194 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FSD2	A1L4K1	749 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FAM92A	A1XBS5	289 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	OR6C75	A6NL08	312 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TNFRSF10B	O14763	440 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TRAPPC3	O43617	180 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ATP9B	O43861	1147 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	STX10	O60499	249 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	N4BP1	O75113	896 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	MOSPD3	O75425	235 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	TADA3	O75528	432 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	RFPL2	O75678	378 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	BEST1	O76090	585 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CXCL14	O95715	111 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CAVIN2	O95810	425 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	CALCA	P01258	141 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	KRT19	P08727	400 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	WEE2	P0C1S8	567 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FAM87A	P0C7U9	286 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PNMA6A	P0CW24	399 aa	Predicted RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	ATF2	P15336	505 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FOSL2	P15408	326 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	HMGA1	P17096	107 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	OR1D2	P34982	312 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	MTIF2	P46199	727 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NRIP1	P48552	1158 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	RPL34	P49207	117 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	GPR15	P49685	360 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	NDST1	P52848	882 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	EPHA5	P54756	1037 aa		4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	PSMC1	P62191	440 aa	Known RBP	4.03	□□□□□ -1.76
SMARCE1-215	ENST00000578995	FANCC	Q00597	558 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms