RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 FOXF2Q12947 444 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 ATP1A4Q13733 1029 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 UBE4AQ14139 1066 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 MAPKAPK3Q16644 382 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 FAM187BQ17R55 369 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 AASDHQ4L235 1098 aaPredicted RBP6.2□□□□□ -1.42
NUP88-213ENST00000576862 DENND2CQ68D51 928 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 SKAP1Q86WV1 359 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 GALNT4Q8N4A0 578 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.2□□□□□ -1.42
NUP88-213ENST00000576862 PNLDC1Q8NA58 520 aaKnown RBP6.2□□□□□ -1.42
NUP88-213ENST00000576862 STK33Q9BYT3 514 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 GAR1Q9NY12 217 aaKnown RBP6.2□□□□□ -1.42
NUP88-213ENST00000576862 H3BNC9 293 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 DHHO43323 396 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 PRAMEF2O60811 474 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 MBPP02686 304 aaPredicted RBP6.19□□□□□ -1.42
NUP88-213ENST00000576862 IDEP14735 1019 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 GPC5P78333 572 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 CFHR3Q02985 330 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 SLC10A2Q12908 348 aaPredicted RBP6.19□□□□□ -1.42
NUP88-213ENST00000576862 DNASE1L3Q13609 305 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 SERPINA13PQ6UXR4 307 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 TOGARAM2Q6ZUX3 1019 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 MORC1Q86VD1 984 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 C12orf76Q8N812 135 aaPredicted RBP6.19□□□□□ -1.42
NUP88-213ENST00000576862 MAFAQ8NHW3 353 aaPredicted RBP6.19□□□□□ -1.42
NUP88-213ENST00000576862 ADAMTS18Q8TE60 1221 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 DDB2Q92466 427 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 VPS50Q96JG6 964 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 ASB2Q96Q27 587 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 SAP30LQ9HAJ7 183 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 NECTIN3Q9NQS3 549 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 VPS45Q9NRW7 570 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 ADARB2Q9NS39 739 aaKnown RBP6.19□□□□□ -1.42
NUP88-213ENST00000576862 TM7SF3Q9NS93 570 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 FLRT1Q9NZU1 646 aa6.19□□□□□ -1.42
NUP88-213ENST00000576862 BTBD19C9JJ37 291 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 HNRNPDLO14979 420 aaKnown RBP6.18□□□□□ -1.42
NUP88-213ENST00000576862 CYP2A6P11509 494 aaPredicted RBP6.18□□□□□ -1.42
NUP88-213ENST00000576862 HTR3AP46098 478 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 MRPS21P82921 87 aaKnown RBP6.18□□□□□ -1.42
NUP88-213ENST00000576862 KCNJ12Q14500 433 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 LARS2Q15031 903 aaKnown RBP6.18□□□□□ -1.42
NUP88-213ENST00000576862 RAB30Q15771 203 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 AWAT1Q58HT5 328 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 FAM90A2PQ658T7 463 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 FBXO38Q6PIJ6 1188 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 SRRM1Q8IYB3 904 aaKnown RBP6.18□□□□□ -1.42
NUP88-213ENST00000576862 C8orf58Q8NAV2 365 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 CDC23Q9UJX2 597 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 DTNAQ9Y4J8 743 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 CEP83Q9Y592 693 aa6.18□□□□□ -1.42
NUP88-213ENST00000576862 ZSCAN9O15535 394 aaPredicted RBP6.17□□□□□ -1.42
NUP88-213ENST00000576862 CHRM5P08912 532 aaPredicted RBP6.17□□□□□ -1.42
NUP88-213ENST00000576862 PPM1AP35813 382 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 IL6STP40189 918 aaPredicted RBP6.17□□□□□ -1.42
NUP88-213ENST00000576862 BTKQ06187 659 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 NSUN2Q08J23 767 aaKnown RBP eCLIP6.17□□□□□ -1.42
NUP88-213ENST00000576862 GRM1Q13255 1194 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 TMEM196Q5HYL7 178 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 CCDC17Q96LX7 622 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 FYTTD1Q96QD9 318 aaKnown RBP6.17□□□□□ -1.42
NUP88-213ENST00000576862 TTLL2Q9BWV7 592 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 USP29Q9HBJ7 922 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 SLC52A1Q9NWF4 448 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 IGSF9Q9P2J2 1179 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 SLC39A10Q9ULF5 831 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 FZD4Q9ULV1 537 aa6.17□□□□□ -1.42
NUP88-213ENST00000576862 ZCCHC6Q5VYS8 1495 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 GCATO75600 419 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 CELA2AP08217 269 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 TXNL4AP83876 142 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 SRSF4Q08170 494 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 HDAC1Q13547 482 aaPredicted RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 CEP78Q5JTW2 689 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 P3H2Q8IVL5 708 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 SYTL1Q8IYJ3 562 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 ACRBPQ8NEB7 543 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 NGDNQ8NEJ9 315 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 IPO4Q8TEX9 1081 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 PNISRQ8TF01 805 aaKnown RBP6.16□□□□□ -1.42
NUP88-213ENST00000576862 GRAMD1AQ96CP6 724 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 FSCN3Q9NQT6 498 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 SEMA5BQ9P283 1151 aa6.16□□□□□ -1.42
NUP88-213ENST00000576862 UBE2Q2LH0YL09 131 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 CLIC1O00299 241 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 FYB1O15117 783 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 VIPP01282 170 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 TMIGD3P0DMS9 266 aaPredicted RBP6.15□□□□□ -1.42
NUP88-213ENST00000576862 CYP2D6P10635 497 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 DRD1P21728 446 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 MPGP29372 298 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 GALNSP34059 522 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 DGKQP52824 942 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 CCDC15Q0P6D6 951 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 KCNB1Q14721 858 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 MFSD13AQ14CX5 517 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 TLDC1Q6P9B6 456 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 TMEM65Q6PI78 240 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms